Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC27_RS01390 Genome accession   NZ_CP046336
Coordinates   300728..301276 (-) Length   182 a.a.
NCBI ID   WP_006398270.1    Uniprot ID   A0A1W0ZR43
Organism   Burkholderia multivorans strain FDAARGOS_719     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295728..306276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC27_RS01365 (FOC27_01365) - 296452..297633 (-) 1182 WP_039220082.1 acetyl-CoA C-acetyltransferase -
  FOC27_RS01370 (FOC27_01370) phaP 297907..298488 (-) 582 WP_006398274.1 TIGR01841 family phasin -
  FOC27_RS01375 (FOC27_01375) - 298945..299709 (-) 765 WP_059782489.1 ParA family protein -
  FOC27_RS01380 (FOC27_01380) - 299759..299959 (-) 201 WP_155823177.1 hypothetical protein -
  FOC27_RS01385 (FOC27_01385) - 299960..300586 (-) 627 WP_006398271.1 DNA-3-methyladenine glycosylase -
  FOC27_RS01390 (FOC27_01390) ssb 300728..301276 (-) 549 WP_006398270.1 single-stranded DNA-binding protein Machinery gene
  FOC27_RS01395 (FOC27_01395) - 301379..302566 (-) 1188 WP_006398269.1 MFS transporter -
  FOC27_RS01400 (FOC27_01400) uvrA 302822..305707 (+) 2886 WP_006411685.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18704.50 Da        Isoelectric Point: 5.3476

>NTDB_id=402849 FOC27_RS01390 WP_006398270.1 300728..301276(-) (ssb) [Burkholderia multivorans strain FDAARGOS_719]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGDEGGYGGGYGGGGGGGRGEQMERGGGGGRASGAARGGGGG
GQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=402849 FOC27_RS01390 WP_006398270.1 300728..301276(-) (ssb) [Burkholderia multivorans strain FDAARGOS_719]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACCACCGACCGCTACAAGGACAAGGCGAGCGGCGAGTTCAAGGAAATGACCGAGTGGC
ATCGCGTCGCATTCTTCGGCCGTCTCGCCGAAATCGTCAGCGAATACCTGAAGAAGGGCTCGTCGGTCTACATCGAAGGC
CGGATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGCTCGGGCGGTGGCGGCGGCGGTGACGAAGGCGGTTACGGCGGCGGCTACGGCGGTGGTGGTG
GCGGCGGTCGCGGCGAGCAGATGGAGCGCGGCGGCGGTGGCGGTCGTGCAAGCGGCGCGGCGCGTGGCGGTGGCGGTGGC
GGCCAGAGCCGTCCGAGCGCGCCGGCTGGCGGCGGCTTCGACGAGATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W0ZR43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.521

100

0.533
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.484
  ssb Neisseria gonorrhoeae MS11

44.262

100

0.445
  ssb Neisseria meningitidis MC58

43.716

100

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.264

100

0.363

Multiple sequence alignment