Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSEBR_RS25790 | Genome accession | NC_015379 |
| Coordinates | 5853880..5854749 (+) | Length | 289 a.a. |
| NCBI ID | WP_013694232.1 | Uniprot ID | F2KLD3 |
| Organism | Pseudomonas brassicacearum subsp. brassicacearum NFM421 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5848880..5859749
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSEBR_RS25765 (PSEBR_a4823) | - | 5849057..5849353 (+) | 297 | WP_013694228.1 | DUF2845 domain-containing protein | - |
| PSEBR_RS25770 (PSEBR_a4824) | - | 5849682..5850035 (-) | 354 | WP_013694229.1 | BON domain-containing protein | - |
| PSEBR_RS25775 (PSEBR_a4825) | pilA | 5850308..5850733 (-) | 426 | WP_013694230.1 | pilin | Machinery gene |
| PSEBR_RS25780 (PSEBR_a4826) | pilB | 5850958..5852658 (+) | 1701 | WP_013694231.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSEBR_RS25785 (PSEBR_a4827) | pilC | 5852661..5853878 (+) | 1218 | WP_003205670.1 | type II secretion system F family protein | Machinery gene |
| PSEBR_RS25790 (PSEBR_a4828) | pilD | 5853880..5854749 (+) | 870 | WP_013694232.1 | prepilin peptidase | Machinery gene |
| PSEBR_RS25795 (PSEBR_a4829) | coaE | 5854749..5855372 (+) | 624 | WP_013694233.1 | dephospho-CoA kinase | - |
| PSEBR_RS25800 (PSEBR_a4830) | yacG | 5855369..5855575 (+) | 207 | WP_003205675.1 | DNA gyrase inhibitor YacG | - |
| PSEBR_RS25805 (PSEBR_a4831) | - | 5855572..5855787 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| PSEBR_RS25810 (PSEBR_a4832) | - | 5855851..5856537 (-) | 687 | WP_003205678.1 | energy-coupling factor ABC transporter permease | - |
| PSEBR_RS25815 (PSEBR_a4833) | - | 5856579..5856989 (-) | 411 | WP_003205679.1 | tautomerase family protein | - |
| PSEBR_RS25820 (PSEBR_a4834) | - | 5857142..5858035 (+) | 894 | WP_003205681.1 | LysR substrate-binding domain-containing protein | - |
| PSEBR_RS25825 (PSEBR_a4835) | - | 5858587..5859213 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| PSEBR_RS25830 (PSEBR_c2g98) | - | 5859210..5859737 (+) | 528 | WP_003205684.1 | MOSC domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31929.10 Da Isoelectric Point: 8.0578
>NTDB_id=40278 PSEBR_RS25790 WP_013694232.1 5853880..5854749(+) (pilD) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=40278 PSEBR_RS25790 WP_013694232.1 5853880..5854749(+) (pilD) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio campbellii strain DS40M4 |
50.877 |
98.616 |
0.502 |
| pilD | Acinetobacter baumannii D1279779 |
49.11 |
97.232 |
0.478 |
| pilD | Acinetobacter nosocomialis M2 |
49.11 |
97.232 |
0.478 |
| pilD | Neisseria gonorrhoeae MS11 |
47.387 |
99.308 |
0.471 |