Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB89_RS04970 Genome accession   NZ_CP046329
Coordinates   1080743..1082272 (-) Length   509 a.a.
NCBI ID   WP_011920159.1    Uniprot ID   -
Organism   Shewanella putrefaciens strain FDAARGOS_681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1075743..1087272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB89_RS04945 (FOB89_04945) prpB 1076285..1077163 (-) 879 WP_006084450.1 methylisocitrate lyase -
  FOB89_RS04950 (FOB89_04950) - 1077216..1077983 (-) 768 WP_011791017.1 GntR family transcriptional regulator -
  FOB89_RS04955 (FOB89_04955) - 1078284..1078790 (+) 507 WP_011920160.1 DUF523 domain-containing protein -
  FOB89_RS04960 (FOB89_04960) - 1078787..1079731 (-) 945 WP_011791015.1 acyltransferase -
  FOB89_RS04965 (FOB89_04965) - 1079745..1080641 (-) 897 WP_011791014.1 acyltransferase -
  FOB89_RS04970 (FOB89_04970) comM 1080743..1082272 (-) 1530 WP_011920159.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB89_RS04975 (FOB89_04975) sodC 1082432..1082953 (-) 522 WP_011920158.1 superoxide dismutase family protein -
  FOB89_RS04980 (FOB89_04980) - 1083217..1084341 (+) 1125 WP_011920157.1 DUF1963 domain-containing protein -
  FOB89_RS04990 (FOB89_04990) - 1084702..1087116 (-) 2415 WP_011920156.1 TonB-dependent receptor domain-containing protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55451.80 Da        Isoelectric Point: 7.7920

>NTDB_id=402730 FOB89_RS04970 WP_011920159.1 1080743..1082272(-) (comM) [Shewanella putrefaciens strain FDAARGOS_681]
MAIACVNTRASCGVEAPKVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGQIRYCQGLLPAIIAAKRQDNTLILPLENRHDAELVGYQKVFFGSHL
QSLAAFLQGQAPLPELDTHLEWVSEEQSYDSSQCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLP
ALSYEEALEVAAIHSVAGLDIKPQDFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLR
EPMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDANNRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQA
MAPSETSQDVAKRVRRARDIQLARSGVLNSELTGKQLKLFSGLTDADLIFLEQSVVKLGLSVRSFHRIQRVARTIADLEQ
SPNTERRHLAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=402730 FOB89_RS04970 WP_011920159.1 1080743..1082272(-) (comM) [Shewanella putrefaciens strain FDAARGOS_681]
ATGGCAATTGCCTGCGTTAACACTCGAGCCAGTTGCGGGGTTGAAGCCCCAAAAGTCACGGTTGAAGTACATCTTAGTAA
TGGGTTACCTGCATTTAATCTAGTGGGATTACCTGAAGCCTCGGTAAAGGAAGCCCGTGAACGAGTACGTAGCGCACTGA
TCAACGCAGGTTTTGAATTCCCAATGCGCAGAATTACTGTCAATCTCGCGCCGGCAGATTTGCCGAAACAAGGGGGTCGC
TACGATTTACCTATCGCTGTGGGCATACTCGCGGCATCCGAACAAATTCCAGCTAACAGTTTAAAAAATTTAGAATTTGT
GGGTGAACTGGCGCTTTCTGGACAGATTCGTTATTGCCAAGGGCTGCTACCTGCAATTATTGCAGCAAAACGCCAAGACA
ATACTTTAATTTTGCCATTGGAAAATCGTCACGATGCCGAGTTAGTTGGCTATCAAAAGGTATTTTTTGGATCGCACTTA
CAAAGTCTCGCGGCATTTTTACAAGGTCAAGCACCGCTACCGGAACTTGATACTCATCTTGAATGGGTAAGCGAAGAACA
ATCCTATGATTCAAGCCAATGCTTAAGCGATGTGATAGGACAATATCAAGCCAAACAAGCACTGGAAATTGCGGCGGCAG
GTAATCATAACCTTTTGATGCTGGGCCCGCCCGGAACTGGAAAAACCATGCTGGCCAGCCGCATGATGGCGCTACTCCCT
GCCTTAAGTTATGAAGAAGCATTAGAAGTTGCCGCTATTCACTCCGTTGCAGGACTCGACATCAAGCCACAAGATTTTTT
AAAACGCCCCTTTAGAGCGCCACACCACACAAGTTCATCAATATCCCTCGTGGGTGGCGGAAGTATTCCAAAACCCGGTG
AAATCTCCCTCGCACACCGTGGCGTCTTATTTTTAGATGAAGTTGCTGAATTTCCACGTAAAGTGCTCGACTGCCTACGT
GAGCCTATGGAAACAGGCGAAGTAGTCATTTCCCGCGCCGCCGCTAAACTCACGTTTTTAAGCCGTTTTCAATTAATCGC
CGCCATGAATCCTAGCCCTAGCGGTGATATTGATGCAAATAACCGCGCCACTCCAGATCAAGTACAGCGGTATCTTGCAA
GATTGTCGGGCCCATTTCTCGATAGATTTGATCTCACGATTGAAGTGCCAAAACTACCCGCAGGCACACTCACCCAAGCC
ATGGCGCCGAGCGAAACTAGCCAAGATGTCGCGAAACGAGTTAGGCGCGCAAGGGATATTCAACTGGCTCGCTCAGGAGT
GCTCAACAGTGAACTTACGGGTAAACAGCTTAAACTTTTCAGTGGTCTAACAGATGCAGACCTTATCTTTTTAGAGCAGA
GCGTCGTCAAACTTGGACTTTCTGTGCGTAGCTTTCATCGTATTCAACGAGTCGCCCGCACGATTGCCGATCTAGAGCAG
TCACCCAATACTGAAAGACGTCACTTGGCTCAAGCATTAGGATATCGCGCTATGGATAGGCTGCTTGCGCGTTTATCTCA
GCAATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.778

100

0.568
  comM Vibrio campbellii strain DS40M4

56.385

100

0.564
  comM Haemophilus influenzae Rd KW20

56.213

99.607

0.56
  comM Glaesserella parasuis strain SC1401

55.424

99.607

0.552
  comM Legionella pneumophila str. Paris

47.937

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.937

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.574

97.839

0.426

Multiple sequence alignment