Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB21_RS08540 Genome accession   NZ_CP046296
Coordinates   1499443..1500933 (+) Length   496 a.a.
NCBI ID   WP_004281040.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS_552     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1494443..1505933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB21_RS08515 (FOB21_08515) ribD 1495365..1496453 (-) 1089 WP_004281045.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FOB21_RS08520 (FOB21_08520) nrdR 1496456..1496920 (-) 465 WP_004281044.1 transcriptional regulator NrdR -
  FOB21_RS08525 (FOB21_08525) - 1497061..1498473 (-) 1413 WP_005249679.1 ammonium transporter -
  FOB21_RS08530 (FOB21_08530) glnK 1498533..1498871 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  FOB21_RS08535 (FOB21_08535) - 1499149..1499376 (+) 228 WP_004281041.1 accessory factor UbiK family protein -
  FOB21_RS08540 (FOB21_08540) comM 1499443..1500933 (+) 1491 WP_004281040.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB21_RS08545 (FOB21_08545) - 1500981..1501715 (-) 735 WP_004732532.1 TorF family putative porin -
  FOB21_RS08550 (FOB21_08550) - 1502312..1503658 (+) 1347 WP_005249655.1 OprD family outer membrane porin -
  FOB21_RS08555 (FOB21_08555) ppa 1503755..1504291 (-) 537 WP_004281037.1 inorganic diphosphatase -
  FOB21_RS08560 (FOB21_08560) - 1504409..1504807 (-) 399 WP_005249654.1 MAPEG family protein -
  FOB21_RS08565 (FOB21_08565) - 1504908..1505288 (+) 381 WP_005108436.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54565.45 Da        Isoelectric Point: 7.2190

>NTDB_id=402409 FOB21_RS08540 WP_004281040.1 1499443..1500933(+) (comM) [Acinetobacter lwoffii strain FDAARGOS_552]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEDCTEHLEFIGELALDGQLRPVSGTLSIAIACQSDQHQLILPGPNAQEACQLPDFKVFAANHL
KEVCEHLSQAQRLPQIEASPLNTDHFYKFDLADVKGQLRPRRGLEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDNRPTE
NSETVRQRVIAAYEIQMQRQNTLNMSLSPKQLEQYAALDQSAQNMLEMAQQKLNLSARGYHRVLRVARTIADLNQSPDIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=402409 FOB21_RS08540 WP_004281040.1 1499443..1500933(+) (comM) [Acinetobacter lwoffii strain FDAARGOS_552]
ATGTCTTTTGCTAAAATTTATACGCGAGGCTTGCTGGGCCTGCATGCGCCTTTAATTGAAGTCGAAGTTCATGTCAGTTC
GGGTATGCCTTCACTCACTATAGTGGGGCTTCCCGAAGCAGCGGTACGTGAAAGTAAAGACCGGGTACGCTCTGCCATTT
TGAATAGCGGCTTTCAATTTCCGACCAAACGTCTGACCATTAATCTGGCGCCAGCAGATCTACCGAAAGATGGATCACGT
CTGGATTTACCGATTGCATTAGGCATTTTAGTGGCTTCAGGCCAGCTGCCTGAAGATTGTACTGAGCATCTGGAGTTTAT
TGGCGAGTTGGCCCTCGATGGTCAATTACGTCCTGTCAGCGGCACCTTAAGTATTGCCATTGCCTGTCAAAGTGACCAGC
ATCAACTGATTTTGCCTGGCCCCAATGCACAGGAAGCCTGTCAGCTCCCAGACTTTAAAGTCTTTGCAGCCAATCATTTA
AAAGAAGTGTGTGAACATCTTTCCCAAGCGCAGCGCTTACCGCAAATAGAAGCCAGTCCACTCAATACAGACCATTTTTA
TAAGTTTGATCTGGCGGATGTAAAAGGACAATTACGACCACGGCGTGGCTTGGAAATTGCTGCGGCAGGTGGTCATTCCC
TGCTGTTTCGAGGCCCACCCGGAACAGGCAAGACCTTGCTGGCTTCTCGATTGGCCAGTATTTTGCCGCCCTTAAAGACG
CAGGAAAATCTGGAAGTGGCCAGTATTTATTCGGTGGCGAATGCCAATCACCCTTTTGGACAACGGCCGTTTCGAGCACC
ACACCATACTGCTTCTGCGGTGGCATTGGTCGGTGGCGGCTCACACCCCAAGCCAGGAGAAATTACCCTGGCACATTTAG
GGGTTTTATTTCTGGACGAACTGCCTGAATTCGACCGCAAAGTGCTGGAGGTTCTACGTCAGCCTTTGGAAGCCAAGGAA
ATCGTCATTTCCCGGGCATCACGCCAAATTACCTTTCCGGCTAATTTCCAGTTGGTGGCTGCCATGAATCCATGTCCATG
TGGGTATGCATTCAATCAAGATATCCGCTGCCAATGTTCACCCGAAAGTATTAAACGCTATCAGAACCGGATTTCAGGCC
CGTTGCTGGATCGGATTGATTTGCATATTGATGTACCGCCATTACAAGCGCATGAATTACAGGACAATCGACCTACAGAA
AACTCAGAAACGGTTAGACAACGCGTCATTGCAGCCTATGAAATTCAGATGCAACGGCAAAATACCTTGAATATGAGTTT
GAGTCCAAAGCAGTTAGAGCAATATGCCGCATTAGATCAGTCTGCTCAGAATATGCTTGAAATGGCTCAGCAAAAACTGA
ATTTATCAGCGCGCGGCTATCATCGGGTCTTGCGTGTTGCACGCACCATTGCCGATTTAAATCAAAGTCCAGATATTCAA
AGTCAGCATCTTTCGGAGGCCCTGTCTTATCGCGGGCAGCAGCAGATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.102

100

0.514
  comM Legionella pneumophila str. Paris

51.008

100

0.51
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.51
  comM Vibrio cholerae strain A1552

50.4

100

0.508
  comM Glaesserella parasuis strain SC1401

49.802

100

0.506
  comM Vibrio campbellii strain DS40M4

49.4

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.525

100

0.484

Multiple sequence alignment