Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   SSAL_RS10235 Genome accession   NC_017594
Coordinates   327226..327975 (-) Length   249 a.a.
NCBI ID   WP_013991120.1    Uniprot ID   A0ABT7LRP2
Organism   Streptococcus salivarius 57.I     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 322226..332975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS01660 (Ssal_00351) - 323600..325345 (+) 1746 WP_045001456.1 ABC transporter ATP-binding protein -
  SSAL_RS01665 (Ssal_00352) - 325505..325735 (+) 231 WP_014632652.1 Blp family class II bacteriocin -
  SSAL_RS10170 (Ssal_00355) - 326224..326391 (+) 168 WP_013991122.1 hypothetical protein -
  SSAL_RS10360 - 326738..327139 (+) 402 WP_013991121.1 hypothetical protein -
  SSAL_RS10235 comD/comD3 327226..327975 (-) 750 WP_013991120.1 GHKL domain-containing protein Regulator
  SSAL_RS01680 (Ssal_00357) comE/blpR 328557..329297 (-) 741 WP_013991119.1 response regulator transcription factor Regulator
  SSAL_RS01685 - 329556..329621 (+) 66 Protein_328 ComC/BlpC family leader-containing pheromone/bacteriocin -
  SSAL_RS01690 - 329630..330022 (+) 393 WP_003094909.1 hypothetical protein -
  SSAL_RS01695 (Ssal_00359) - 330492..330788 (+) 297 WP_013991117.1 bacteriocin immunity protein -
  SSAL_RS01700 (Ssal_00360) - 331006..331371 (+) 366 WP_013991116.1 hypothetical protein -
  SSAL_RS01710 (Ssal_00362) tnpA 332081..332497 (+) 417 WP_002886752.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28636.85 Da        Isoelectric Point: 5.1411

>NTDB_id=40237 SSAL_RS10235 WP_013991120.1 327226..327975(-) (comD/comD3) [Streptococcus salivarius 57.I]
MVIYLVLFFIMLIFLDRNIRATIQSQLDFQKDIQLSHLTNYNKQIENLYQSVRSFRHDYANILTTLKLGIDQNDMAIVKE
VYDSVLKDSDKHLKSKTFDLTRLINIEDNTIKSLLAAKFLEAEENNIDISLDIPETIKLEGMEMVDFITVISIFLDNAME
ASIQSDIPKMHIGYFNHGNKQIFIVQNSTQEEFIPISSLFERGVSSKGDHRGIGLANVRNILDNYQNISLKTESMTFAFT
QELNISKKA

Nucleotide


Download         Length: 750 bp        

>NTDB_id=40237 SSAL_RS10235 WP_013991120.1 327226..327975(-) (comD/comD3) [Streptococcus salivarius 57.I]
GTGGTTATTTATCTAGTCTTGTTCTTTATCATGCTTATCTTCTTAGATAGAAATATCCGAGCAACAATACAAAGTCAGTT
GGACTTTCAAAAAGATATTCAACTATCGCATCTTACGAATTATAACAAACAGATTGAAAACCTCTATCAGTCGGTTCGAA
GTTTTCGTCATGATTATGCCAATATTTTAACAACACTCAAACTTGGTATCGATCAAAATGATATGGCTATTGTAAAAGAA
GTCTACGACTCAGTTCTAAAAGATTCCGATAAGCATTTAAAATCGAAAACATTTGATTTAACTCGCTTAATAAACATAGA
AGATAACACTATCAAAAGCCTACTTGCAGCTAAGTTCCTAGAGGCAGAAGAAAATAACATTGATATCTCCTTAGATATTC
CTGAAACTATCAAACTCGAGGGTATGGAGATGGTCGATTTTATTACTGTAATATCTATCTTTCTAGACAATGCGATGGAA
GCATCGATTCAGTCTGACATACCAAAAATGCATATTGGCTACTTCAATCATGGTAATAAGCAAATCTTTATTGTCCAAAA
CTCAACCCAGGAAGAATTTATTCCTATCTCATCACTTTTTGAGAGAGGTGTCTCCAGTAAAGGGGATCATCGCGGTATAG
GTTTGGCCAACGTTAGGAATATATTAGACAACTATCAAAATATTTCTTTAAAAACTGAAAGTATGACTTTTGCATTTACA
CAGGAACTTAATATATCGAAAAAAGCTTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(142-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

42.798

97.59

0.418
  comD/comD2 Streptococcus equinus JB1

40.329

97.59

0.394
  comD/blpH Streptococcus mutans UA159

39.592

98.394

0.39
  comD/comD1 Streptococcus equinus JB1

39.394

92.771

0.365

Multiple sequence alignment