Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SSAL_RS08295 Genome accession   NC_017594
Coordinates   1790652..1791314 (-) Length   220 a.a.
NCBI ID   WP_045001926.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785652..1796314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS08290 (Ssal_01821) raiA 1790025..1790573 (-) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -
  SSAL_RS08295 (Ssal_01822) comFC/cflB 1790652..1791314 (-) 663 WP_045001926.1 ComF family protein Machinery gene
  SSAL_RS08300 (Ssal_01823) comFA/cflA 1791295..1792614 (-) 1320 WP_014633573.1 DEAD/DEAH box helicase Machinery gene
  SSAL_RS08305 (Ssal_01824) - 1792669..1793295 (+) 627 WP_013990089.1 YigZ family protein -
  SSAL_RS08310 (Ssal_01825) cysK 1793397..1794323 (+) 927 WP_002883742.1 cysteine synthase A -
  SSAL_RS08315 (Ssal_01826) - 1794509..1795168 (-) 660 WP_013990088.1 CBS and ACT domain-containing protein -
  SSAL_RS08320 (Ssal_01828) - 1795303..1796013 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26012.31 Da        Isoelectric Point: 8.7502

>NTDB_id=40215 SSAL_RS08295 WP_045001926.1 1790652..1791314(-) (comFC/cflB) [Streptococcus salivarius 57.I]
MKCLLCNDWIESVPKLRDLITFNQREEYSCLSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYHYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNKLKPFLTKGFTIVPVPLSEERLAERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=40215 SSAL_RS08295 WP_045001926.1 1790652..1791314(-) (comFC/cflB) [Streptococcus salivarius 57.I]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCTTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCACTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAAGTTAAAACCATTTTTGACGAAAGGTTTTACCATAGTGCCGGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TTAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCTACTTTATATCAGATGGTTCAACTATTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment