Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SSAL_RS07880 Genome accession   NC_017594
Coordinates   1707914..1708873 (-) Length   319 a.a.
NCBI ID   WP_014633524.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702914..1713873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS07865 (Ssal_01734) - 1703886..1704593 (-) 708 WP_002886734.1 O-methyltransferase -
  SSAL_RS07870 (Ssal_01735) - 1704665..1705885 (-) 1221 WP_014633522.1 OFA family MFS transporter -
  SSAL_RS07875 (Ssal_01736) pepF 1706098..1707903 (-) 1806 WP_014633523.1 oligoendopeptidase F Regulator
  SSAL_RS07880 (Ssal_01737) coiA 1707914..1708873 (-) 960 WP_014633524.1 competence protein CoiA family protein Machinery gene
  SSAL_RS07885 - 1710197..1711178 (+) 982 Protein_1551 IS3 family transposase -
  SSAL_RS07890 (Ssal_01740) - 1711505..1712344 (-) 840 WP_002886729.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37868.73 Da        Isoelectric Point: 9.2968

>NTDB_id=40209 SSAL_RS07880 WP_014633524.1 1707914..1708873(-) (coiA) [Streptococcus salivarius 57.I]
MLIAKNQEGNLVLALETCLKRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSELGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEKVETYKVTQRKRVSHVIQRELMGKNPRW
MRRQEEAYLNGMNLLCLSDQDFSPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=40209 SSAL_RS07880 WP_014633524.1 1707914..1708873(-) (coiA) [Streptococcus salivarius 57.I]
ATGTTAATTGCAAAAAATCAGGAGGGAAACCTCGTTTTAGCTCTAGAAACCTGTTTGAAACGTAAGGAATCCTATAGCTG
TCCTGGATGCCAGGGAGTTGTCCTATTGAGGCATGGCCAGGTAATGTGCCCACATTTTGCTCATAAATCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCTCAACATTTATCGCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCCGAGTTGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGTTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGAGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGCCACTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGAAGG
TTGAGACTTATAAAGTAACTCAGCGAAAGAGGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAATGGAATGAATTTATTATGCCTGTCTGATCAGGATTTTTCCCCACAAGTAAG
ATTTCCTGAATCTAAGCAGGGCTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.659

97.492

0.445
  coiA Streptococcus pneumoniae Rx1

45.659

97.492

0.445
  coiA Streptococcus pneumoniae D39

45.659

97.492

0.445
  coiA Streptococcus pneumoniae R6

45.659

97.492

0.445
  coiA Streptococcus mitis NCTC 12261

45.367

98.119

0.445
  coiA Lactococcus lactis subsp. cremoris KW2

36.667

100

0.379

Multiple sequence alignment