Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   GKC25_RS06265 Genome accession   NZ_CP046128
Coordinates   1271683..1273785 (-) Length   700 a.a.
NCBI ID   WP_187704472.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266683..1278785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS06240 (GKC25_06185) - 1267271..1267513 (+) 243 WP_034662891.1 aspartyl-phosphate phosphatase Spo0E family protein -
  GKC25_RS06245 (GKC25_06190) - 1267560..1269065 (-) 1506 WP_034662888.1 ATP-binding protein -
  GKC25_RS06250 (GKC25_06195) - 1269271..1269726 (+) 456 WP_034662884.1 MarR family transcriptional regulator -
  GKC25_RS06255 (GKC25_06200) motB 1269756..1270520 (-) 765 WP_060596120.1 flagellar motor protein MotB -
  GKC25_RS06260 (GKC25_06205) motA 1270513..1271307 (-) 795 WP_034662877.1 flagellar motor stator protein MotA -
  GKC25_RS06265 (GKC25_06210) clpC 1271683..1273785 (-) 2103 WP_187704472.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GKC25_RS06270 (GKC25_06215) - 1274029..1275072 (+) 1044 WP_095285070.1 hypothetical protein -
  GKC25_RS06275 (GKC25_06220) queC 1275348..1276004 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  GKC25_RS06280 (GKC25_06225) queD 1276005..1276445 (+) 441 WP_095285072.1 6-carboxytetrahydropterin synthase QueD -
  GKC25_RS06285 (GKC25_06230) queE 1276438..1277169 (+) 732 WP_095285074.1 7-carboxy-7-deazaguanine synthase QueE -
  GKC25_RS06290 (GKC25_06235) queF 1277185..1277682 (+) 498 WP_003211403.1 preQ(1) synthase -
  GKC25_RS06295 (GKC25_06240) - 1277954..1278172 (+) 219 WP_034662856.1 hypothetical protein -
  GKC25_RS06300 (GKC25_06245) - 1278295..1278483 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 78006.55 Da        Isoelectric Point: 4.9628

>NTDB_id=401375 GKC25_RS06265 WP_187704472.1 1271683..1273785(-) (clpC) [Bacillus pumilus strain V17C11]
MRCQYCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDSRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=401375 GKC25_RS06265 WP_187704472.1 1271683..1273785(-) (clpC) [Bacillus pumilus strain V17C11]
ATGCGTTGTCAATATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGGAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAGCTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAACCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAGAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATAGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGAGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATGACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.504

100

0.596
  clpE Streptococcus mutans UA159

57.064

100

0.589
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

53.284

95.714

0.51
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.923

92.857

0.436
  clpC Streptococcus thermophilus LMD-9

46.226

90.857

0.42
  clpC Streptococcus thermophilus LMG 18311

46.069

90.857

0.419
  clpC Streptococcus mutans UA159

43.712

93.143

0.407
  clpC Streptococcus pneumoniae TIGR4

44.904

89.714

0.403
  clpC Streptococcus pneumoniae Rx1

45.104

89

0.401
  clpC Streptococcus pneumoniae D39

45.104

89

0.401

Multiple sequence alignment