Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SL003B_RS11190 Genome accession   NC_015259
Coordinates   2336052..2336582 (+) Length   176 a.a.
NCBI ID   WP_013652956.1    Uniprot ID   -
Organism   Polymorphum gilvum SL003B-26A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2331052..2341582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SL003B_RS22770 (SL003B_2210) - 2331701..2331850 (-) 150 WP_013652953.1 DUF1127 domain-containing protein -
  SL003B_RS22775 (SL003B_2211) - 2332239..2332388 (-) 150 WP_013652954.1 DUF1127 domain-containing protein -
  SL003B_RS11185 (SL003B_2212) uvrA 2332618..2335572 (-) 2955 WP_013652955.1 excinuclease ABC subunit UvrA -
  SL003B_RS11190 (SL003B_2213) ssb 2336052..2336582 (+) 531 WP_013652956.1 single-stranded DNA-binding protein Machinery gene
  SL003B_RS11195 (SL003B_2214) - 2336957..2338876 (+) 1920 WP_013652957.1 L,D-transpeptidase family protein -
  SL003B_RS11200 (SL003B_2215) - 2339103..2340104 (+) 1002 WP_041375498.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18360.00 Da        Isoelectric Point: 5.2955

>NTDB_id=40106 SL003B_RS11190 WP_013652956.1 2336052..2336582(+) (ssb) [Polymorphum gilvum SL003B-26A1]
MAGSVNKVILVGNLGADPEIRRTQDGKPIANLRIATSESWRDRNTGERRERTEWHRVVIFNEGLCKIAEQYLRKGAKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSALTMLDGRGEGGGQGAISDYGSSGNDGYGGGSGGSGGGYGGGSGGGYGGGS
GGGYGGGGPMDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=40106 SL003B_RS11190 WP_013652956.1 2336052..2336582(+) (ssb) [Polymorphum gilvum SL003B-26A1]
ATGGCGGGAAGCGTCAACAAGGTCATTTTGGTCGGCAACCTCGGGGCCGACCCGGAAATCCGGCGCACCCAGGACGGTAA
GCCGATCGCTAACCTGCGCATCGCGACCTCCGAATCCTGGCGCGACCGCAACACCGGCGAGCGGCGCGAGCGGACCGAAT
GGCACCGAGTGGTGATCTTCAACGAGGGCCTGTGCAAGATCGCCGAGCAGTATCTGCGCAAGGGCGCCAAGGTCTATATC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGAGCGGCCAGGACCGCTATTCGACCGAAGTCGTGCTGCAGGGCTT
CAATTCGGCGCTGACCATGCTCGATGGCCGCGGCGAGGGCGGCGGCCAGGGCGCGATATCGGATTACGGCTCGTCCGGCA
ATGATGGCTACGGCGGCGGCTCGGGCGGATCGGGTGGCGGCTACGGCGGCGGATCGGGCGGCGGCTACGGCGGTGGGTCC
GGCGGCGGCTATGGCGGCGGTGGACCGATGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.959

100

0.534
  ssb Vibrio cholerae strain A1552

51.149

98.864

0.506
  ssb Neisseria gonorrhoeae MS11

36.022

100

0.381
  ssb Neisseria meningitidis MC58

36.022

100

0.381

Multiple sequence alignment