Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GGC04_RS14610 Genome accession   NZ_CP046065
Coordinates   3153816..3154364 (-) Length   182 a.a.
NCBI ID   WP_006958299.1    Uniprot ID   A0A097QHM9
Organism   Vibrio sp. THAF191d     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3148816..3159364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC04_RS14590 (GGC04_14765) - 3149251..3149574 (-) 324 WP_006958295.1 hypothetical protein -
  GGC04_RS14595 (GGC04_14770) gspM 3149567..3150217 (-) 651 WP_006958296.1 type II secretion system protein GspM -
  GGC04_RS14600 (GGC04_14775) - 3150217..3151656 (-) 1440 WP_006958297.1 hypothetical protein -
  GGC04_RS14605 (GGC04_14780) csrD 3151653..3153668 (-) 2016 WP_006958298.1 RNase E specificity factor CsrD -
  GGC04_RS14610 (GGC04_14785) ssb 3153816..3154364 (-) 549 WP_006958299.1 single-stranded DNA-binding protein Machinery gene
  GGC04_RS14615 (GGC04_14790) qstR 3154646..3155293 (+) 648 WP_006958300.1 LuxR C-terminal-related transcriptional regulator Regulator
  GGC04_RS14620 (GGC04_14795) galU 3155411..3156283 (+) 873 WP_006958301.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GGC04_RS14625 (GGC04_14800) uvrA 3156423..3159245 (+) 2823 WP_006958302.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20140.20 Da        Isoelectric Point: 4.9269

>NTDB_id=400865 GGC04_RS14610 WP_006958299.1 3153816..3154364(-) (ssb) [Vibrio sp. THAF191d]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=400865 GGC04_RS14610 WP_006958299.1 3153816..3154364(-) (ssb) [Vibrio sp. THAF191d]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTGGCTGAAGTTGCAGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGATCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QHM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.978

100

0.819
  ssb Glaesserella parasuis strain SC1401

55.44

100

0.588
  ssb Neisseria meningitidis MC58

44.865

100

0.456
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.456

Multiple sequence alignment