Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GGC04_RS14615 Genome accession   NZ_CP046065
Coordinates   3154646..3155293 (+) Length   215 a.a.
NCBI ID   WP_006958300.1    Uniprot ID   A0A097QHL5
Organism   Vibrio sp. THAF191d     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149646..3160293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC04_RS14600 (GGC04_14775) - 3150217..3151656 (-) 1440 WP_006958297.1 hypothetical protein -
  GGC04_RS14605 (GGC04_14780) csrD 3151653..3153668 (-) 2016 WP_006958298.1 RNase E specificity factor CsrD -
  GGC04_RS14610 (GGC04_14785) ssb 3153816..3154364 (-) 549 WP_006958299.1 single-stranded DNA-binding protein Machinery gene
  GGC04_RS14615 (GGC04_14790) qstR 3154646..3155293 (+) 648 WP_006958300.1 LuxR C-terminal-related transcriptional regulator Regulator
  GGC04_RS14620 (GGC04_14795) galU 3155411..3156283 (+) 873 WP_006958301.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GGC04_RS14625 (GGC04_14800) uvrA 3156423..3159245 (+) 2823 WP_006958302.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25102.09 Da        Isoelectric Point: 8.7680

>NTDB_id=400866 GGC04_RS14615 WP_006958300.1 3154646..3155293(+) (qstR) [Vibrio sp. THAF191d]
MTKNIYTRTIYFLCEDSSQNNRFIHQIEKQLGVDIPHIEPNELMLAMQQHKHKILMIDYQNYRKLNNQIRDLPLSNKMFE
TIIFNVEKRLTTEELLCFGNLKGLFYQDDSVEAIAKGCGEIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREI
QILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=400866 GGC04_RS14615 WP_006958300.1 3154646..3155293(+) (qstR) [Vibrio sp. THAF191d]
ATGACTAAAAACATCTATACCAGAACTATCTACTTTCTCTGTGAAGACAGCTCTCAAAACAACCGTTTCATTCATCAAAT
AGAGAAGCAGCTCGGTGTTGATATTCCGCACATTGAACCAAACGAGTTGATGCTTGCCATGCAGCAACACAAACATAAAA
TTCTAATGATAGATTACCAAAACTACAGAAAGCTCAATAATCAGATTCGAGATTTGCCTCTATCGAATAAAATGTTTGAA
ACCATAATCTTTAATGTAGAAAAAAGACTTACTACAGAAGAGCTACTGTGCTTTGGCAACTTGAAAGGATTGTTTTATCA
AGATGACTCCGTTGAAGCCATCGCTAAAGGGTGTGGTGAGATAATCAACAGTCAAAACTGGTTGCCCCGTAAAGTCGCAG
CTCAGCTACTGCATTACTATCGTCATGTTGTGCTTAGCCAGACAGCCCCTGCAACTGTGGATTTAACCTCACGTGAAATT
CAGATTCTACGCTGTTTAAAAACTGGGGCGTCCAATATGCAAATCGCAGAGGATCTGTTTATTAGTGAGTTTACTGTTAA
GTCCCACCTTTATCAGATTTTCAAAAAGCTTTCCGTTAAAAATCGTGTCCAAGCCATTGCTTGGGCTAATCAACATATGC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QHL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

59.813

99.535

0.595
  qstR Vibrio parahaemolyticus RIMD 2210633

56.682

100

0.572
  qstR Vibrio campbellii strain DS40M4

57.209

100

0.572

Multiple sequence alignment