Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   GJQ55_RS00875 Genome accession   NZ_CP046056
Coordinates   184988..185671 (+) Length   227 a.a.
NCBI ID   WP_228345627.1    Uniprot ID   A0A9X7YMV7
Organism   Venatoribacter cucullus strain ASxL5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 179988..190671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJQ55_RS00860 (GJQ55_00865) pilT 180387..181421 (+) 1035 WP_228345624.1 type IV pilus twitching motility protein PilT Machinery gene
  GJQ55_RS00865 (GJQ55_00870) pilU 181434..182549 (+) 1116 WP_228345625.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  GJQ55_RS00870 (GJQ55_00875) - 182643..184919 (+) 2277 WP_228345626.1 bifunctional diguanylate cyclase/phosphodiesterase -
  GJQ55_RS00875 (GJQ55_00880) ideA 184988..185671 (+) 684 WP_228345627.1 endonuclease Regulator
  GJQ55_RS00880 (GJQ55_00885) - 185722..186171 (+) 450 WP_228345628.1 PhnE/PtxC family ABC transporter permease -
  GJQ55_RS00885 (GJQ55_00890) - 186313..187380 (+) 1068 WP_228345629.1 HlyD family secretion protein -
  GJQ55_RS00890 (GJQ55_00895) rbbA 187377..190109 (+) 2733 WP_228345630.1 ribosome-associated ATPase/putative transporter RbbA -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26131.74 Da        Isoelectric Point: 8.9392

>NTDB_id=400731 GJQ55_RS00875 WP_228345627.1 184988..185671(+) (ideA) [Venatoribacter cucullus strain ASxL5]
MIVRWLCGCLALFSLLVQAQTGPANFNEAKRLAVKIYAGHPYTFYCDCAFSGKQIDARSCGYAPRKNAKRGARLEWEHVV
PAWEFGHQRQCWQNGGRKHCVKTDATFRRMEADLHNLVPAVGELNGDRSNYRFGMLEGEPRVYGQCDFEVDFKLRRAEPK
DDRRGDVARIYFYMRDQYGLAISRQQNQLFTAWSKLDPPDAWECERNRRIALLQGRGNPHVQACPAP

Nucleotide


Download         Length: 684 bp        

>NTDB_id=400731 GJQ55_RS00875 WP_228345627.1 184988..185671(+) (ideA) [Venatoribacter cucullus strain ASxL5]
ATGATTGTGCGCTGGTTGTGTGGTTGTCTCGCACTGTTTTCCCTGTTGGTTCAGGCCCAGACCGGGCCGGCTAATTTCAA
CGAAGCCAAACGGCTGGCAGTTAAGATTTATGCCGGCCATCCCTATACTTTTTATTGTGATTGCGCCTTCAGCGGCAAGC
AGATTGATGCCCGCAGTTGTGGCTACGCACCGCGCAAAAACGCTAAGCGCGGCGCACGGCTGGAGTGGGAGCATGTGGTA
CCGGCCTGGGAATTTGGCCATCAGCGCCAGTGCTGGCAGAACGGTGGACGCAAACACTGCGTGAAAACCGATGCTACCTT
CCGGCGTATGGAGGCCGACCTGCACAATCTGGTGCCGGCGGTGGGCGAGCTGAACGGTGACCGTTCCAACTATCGCTTTG
GCATGCTCGAGGGTGAGCCGCGCGTGTACGGTCAGTGTGATTTTGAAGTGGACTTCAAATTGCGGCGTGCCGAGCCTAAA
GATGATCGTCGCGGCGATGTAGCGCGTATCTATTTTTATATGCGCGATCAGTACGGTCTGGCCATCAGCCGTCAACAAAA
CCAGCTCTTTACCGCCTGGAGCAAACTCGATCCGCCGGATGCCTGGGAATGCGAGCGTAACCGTCGCATTGCCTTGCTGC
AGGGGCGCGGCAACCCGCATGTGCAGGCTTGCCCGGCCCCCTGA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(28-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

62.791

94.714

0.595
  dns Vibrio parahaemolyticus RIMD 2210633

56.25

98.678

0.555
  dns Aliivibrio fischeri ES114

52.174

100

0.529
  dns Vibrio cholerae strain A1552

51.515

100

0.524
  dns Campylobacter jejuni RM1221

40.444

99.119

0.401

Multiple sequence alignment