Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GJQ55_RS00260 Genome accession   NZ_CP046056
Coordinates   59373..60887 (+) Length   504 a.a.
NCBI ID   WP_228345513.1    Uniprot ID   A0A9X7UTY9
Organism   Venatoribacter cucullus strain ASxL5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 54373..65887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJQ55_RS00240 (GJQ55_00240) - 54984..55883 (+) 900 WP_228345509.1 LysR family transcriptional regulator -
  GJQ55_RS00245 (GJQ55_00245) - 55965..56588 (+) 624 WP_228345510.1 SCO family protein -
  GJQ55_RS00250 (GJQ55_00250) - 56601..59177 (-) 2577 WP_228345511.1 S8 family serine peptidase -
  GJQ55_RS00255 - 59176..59316 (+) 141 WP_228345512.1 hypothetical protein -
  GJQ55_RS00260 (GJQ55_00255) comM 59373..60887 (+) 1515 WP_228345513.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GJQ55_RS00265 (GJQ55_00260) - 60947..61135 (+) 189 WP_228345514.1 hypothetical protein -
  GJQ55_RS00270 (GJQ55_00265) rep 61237..63264 (+) 2028 WP_228345515.1 DNA helicase Rep -
  GJQ55_RS00275 (GJQ55_00270) - 63457..64620 (+) 1164 WP_228345516.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54703.51 Da        Isoelectric Point: 7.7066

>NTDB_id=400727 GJQ55_RS00260 WP_228345513.1 59373..60887(+) (comM) [Venatoribacter cucullus strain ASxL5]
MSLARIYTRAMAGIDAPPVVVEVHLSGGLPSLSLVGLPETAVKESKDRVRSALLNSDFEFPAKRITINLSPADLPKEGGR
YDLAIALGILAASEQIPATLLEQHEFIGELTLGGELQRVPGVLPCALHSAKAGRTLVLPVQNAGEAALCHQGEFRAASKL
REVTAYLQGLQALTVIERAEPATPAQWHSADLSDVRGQPQARRALEIAAAGDHNLLFIGPPGTGKTMLASRLPGILPPMS
EEEALVSASVYSISNQSSDWQQRWRVRPFRAPHHTASGVALVGGGSSPKPGEISLAHGGVLFLDELPEFSRKVLDVLREP
LENGRIVISRANRSMTFPARFQLIAAMNPCPCGYFGDPSGRCHCTSEQIRRYQGQTSGPLLDRIDLHVEVPALPPALLQQ
APPGESSATVQARVMAARQRQWQRQGCANAALDPQQRGQFCALQQADEDWFLNAIEKLQLSARGYHRLLKIARTVADLNG
DEWIARPHLLEALSYRSLDRYRPG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=400727 GJQ55_RS00260 WP_228345513.1 59373..60887(+) (comM) [Venatoribacter cucullus strain ASxL5]
ATGTCGCTTGCCCGAATTTACACCCGCGCCATGGCGGGTATCGATGCGCCGCCGGTGGTGGTGGAAGTGCACTTATCCGG
TGGATTGCCCTCGCTCAGCCTGGTCGGGTTGCCGGAAACGGCGGTGAAGGAAAGCAAAGACCGGGTGCGCAGTGCGCTGC
TGAACAGCGATTTTGAGTTTCCCGCCAAACGCATCACCATCAATTTATCGCCGGCCGATCTGCCCAAAGAGGGTGGCCGT
TACGATCTGGCCATTGCGCTGGGCATTCTGGCGGCGTCGGAGCAGATTCCCGCAACGTTGCTGGAGCAGCATGAGTTTAT
TGGCGAGCTGACCTTAGGCGGCGAGCTGCAGCGGGTGCCGGGTGTATTGCCGTGCGCACTGCACAGTGCCAAAGCCGGGC
GCACGCTGGTGTTGCCAGTGCAGAACGCCGGCGAAGCGGCGTTGTGCCATCAGGGTGAATTCCGCGCCGCCAGCAAACTG
CGTGAGGTCACGGCTTATCTGCAAGGACTGCAGGCGTTAACCGTGATTGAGCGCGCGGAGCCGGCAACACCGGCACAATG
GCACAGCGCAGATCTGAGTGATGTGCGCGGCCAGCCGCAGGCGCGGCGGGCGCTGGAAATCGCCGCCGCTGGCGATCATA
ACCTCTTGTTTATCGGCCCGCCGGGCACCGGCAAAACCATGTTGGCCAGCCGCTTGCCGGGCATTCTGCCGCCCATGAGT
GAAGAAGAAGCACTGGTGTCGGCCTCGGTGTATTCCATCAGCAATCAGAGCAGCGACTGGCAGCAGCGCTGGCGGGTACG
GCCCTTCCGTGCGCCACACCACACGGCGTCTGGTGTGGCGCTGGTGGGCGGTGGCTCATCGCCTAAGCCGGGGGAAATAT
CGCTGGCGCATGGCGGCGTGCTGTTTCTTGATGAGCTACCGGAGTTCAGTCGCAAGGTGCTGGACGTGCTGCGCGAGCCG
CTGGAAAACGGCCGCATCGTCATCAGCCGCGCCAACCGCTCCATGACCTTTCCGGCGCGCTTTCAGCTGATCGCTGCCAT
GAACCCGTGCCCCTGTGGCTATTTCGGTGACCCGTCCGGGCGCTGCCATTGCACCAGTGAACAAATCCGCCGCTATCAGG
GCCAGACCTCCGGCCCGCTGCTCGACCGTATTGATCTGCATGTGGAAGTGCCGGCGCTGCCGCCGGCGTTGTTGCAGCAG
GCGCCGCCCGGCGAAAGTTCGGCCACGGTGCAGGCGCGGGTGATGGCGGCGCGCCAGCGTCAGTGGCAACGCCAGGGCTG
TGCCAATGCCGCGCTCGATCCACAGCAGCGCGGGCAGTTCTGTGCGTTACAGCAGGCCGATGAAGACTGGTTTCTGAACG
CCATTGAAAAGCTGCAGCTGTCGGCGCGCGGTTACCACCGCTTGCTGAAAATTGCCCGCACCGTGGCGGATTTGAATGGT
GACGAATGGATTGCCCGGCCGCACCTGTTGGAAGCGCTCAGTTACCGCAGCCTGGACCGCTATCGGCCGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.086

99.405

0.567
  comM Vibrio campbellii strain DS40M4

56.088

99.405

0.558
  comM Glaesserella parasuis strain SC1401

54.167

100

0.542
  comM Haemophilus influenzae Rd KW20

53.77

100

0.538
  comM Legionella pneumophila str. Paris

52.096

99.405

0.518
  comM Legionella pneumophila strain ERS1305867

52.096

99.405

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment