Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GJ672_RS01210 Genome accession   NZ_CP046046
Coordinates   239757..241268 (-) Length   503 a.a.
NCBI ID   WP_154295500.1    Uniprot ID   A0A6B8JMC1
Organism   Spiribacter sp. 2438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 234757..246268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ672_RS01185 (GJ672_01185) - 235441..236391 (+) 951 WP_154295496.1 sulfurtransferase -
  GJ672_RS01190 (GJ672_01190) - 236408..237619 (+) 1212 WP_154295497.1 YeeE/YedE family protein -
  GJ672_RS01195 (GJ672_01195) - 237756..238838 (-) 1083 WP_229381907.1 histone deacetylase family protein -
  GJ672_RS01205 (GJ672_01205) - 239221..239724 (+) 504 WP_154295499.1 cytochrome c5 family protein -
  GJ672_RS01210 (GJ672_01210) comM 239757..241268 (-) 1512 WP_154295500.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GJ672_RS01215 (GJ672_01215) - 241320..241592 (-) 273 WP_154295501.1 accessory factor UbiK family protein -
  GJ672_RS01220 (GJ672_01220) - 241857..242195 (+) 339 WP_154295502.1 P-II family nitrogen regulator -
  GJ672_RS01225 (GJ672_01225) - 242218..243465 (+) 1248 WP_154295503.1 ammonium transporter -
  GJ672_RS09640 (GJ672_01230) - 243583..244467 (+) 885 WP_154295504.1 NAD(P)-dependent oxidoreductase -
  GJ672_RS01235 (GJ672_01235) - 244468..245118 (-) 651 WP_154295505.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53980.59 Da        Isoelectric Point: 8.2769

>NTDB_id=400662 GJ672_RS01210 WP_154295500.1 239757..241268(-) (comM) [Spiribacter sp. 2438]
MALAVVRTRTALGIDAPTVDVETHLGGGLPSFSIVGMPDTALREARDRVRGALTTSGFEFPRRRITVNLAPADLPKDGAR
FDLAIALGILAASRQINPAALEGGVFSAELALSGALRPVSGTLPMAARCVREDEWLLVARENAQEAALAGGEVRQAGHLL
DVCAHLAGVRTLPRVGEPAHPSTEEATVPDLADVRGQHRARRALEIAAAGAHSLLMQGPPGSGKSMLAARLPGLLPPMSR
QEAIEAAALQSVGEGAFNPTHWGQRPFRQPHHTASSRALTGGGRIPRPGEISLAHHGVLFLDELPEFPRDALEALREPLE
TGEIHISRAHARLRFPARFQLVAAMNPCPCGYLGEDGHGCRCTPPQVQRYRSRISGPLLDRIDMQIDVPRVSPTELGDLS
AGEPTAAVARRAADARQRQLARDGMVAAHIPAREVEKRCPVDQRGRILLSRACDRLNLSARAFHRCLRVARTIADLENSD
GIGERHIAEALGYREQIRPSDSA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=400662 GJ672_RS01210 WP_154295500.1 239757..241268(-) (comM) [Spiribacter sp. 2438]
ATGGCGCTGGCGGTGGTTCGAACGCGCACGGCACTGGGCATCGACGCCCCCACAGTTGATGTCGAAACGCATCTGGGAGG
CGGCCTGCCCTCCTTCTCCATCGTGGGGATGCCGGATACGGCCCTTCGCGAAGCCAGGGATCGTGTGCGGGGTGCCCTCA
CCACCAGTGGCTTTGAATTCCCCCGTCGCCGCATCACGGTCAATCTGGCACCCGCCGATCTGCCCAAAGACGGCGCACGG
TTCGACCTCGCCATCGCCCTGGGGATTCTCGCCGCTTCCCGACAGATCAATCCGGCCGCCCTGGAAGGGGGCGTGTTCAG
CGCCGAACTGGCACTGTCCGGTGCGCTGCGGCCCGTCAGTGGCACCCTACCGATGGCGGCGCGGTGCGTTCGCGAAGACG
AGTGGCTGCTGGTGGCCCGGGAGAATGCGCAGGAAGCGGCCCTGGCGGGCGGCGAGGTCCGCCAGGCCGGGCACCTCCTC
GACGTCTGCGCCCATCTGGCCGGCGTGCGGACGCTGCCTCGGGTTGGCGAACCCGCCCATCCATCCACCGAGGAAGCAAC
GGTTCCGGACCTGGCCGATGTCCGCGGGCAGCATCGCGCCCGGCGCGCCCTGGAGATCGCCGCCGCCGGCGCTCACAGCC
TGCTGATGCAGGGCCCGCCGGGAAGCGGCAAGAGCATGCTGGCGGCACGGCTACCGGGTCTTCTGCCGCCCATGAGTCGG
CAAGAGGCCATCGAAGCCGCCGCGCTTCAGTCCGTGGGGGAAGGCGCTTTCAACCCGACCCACTGGGGCCAGCGGCCATT
TCGCCAGCCCCACCATACCGCCTCGTCGCGCGCCCTCACCGGCGGCGGTCGAATCCCCCGCCCCGGGGAGATTTCGCTGG
CTCACCACGGCGTACTGTTTCTGGACGAACTCCCGGAATTTCCGCGGGATGCCCTGGAGGCGCTGCGGGAACCGCTGGAG
ACCGGCGAGATCCACATTTCCCGGGCCCATGCCCGTCTGCGCTTCCCCGCCCGGTTTCAACTGGTGGCCGCCATGAACCC
ATGCCCCTGTGGGTATCTGGGGGAGGACGGTCACGGTTGCCGCTGTACGCCCCCTCAGGTTCAGCGCTATCGAAGCCGAA
TCAGCGGCCCGCTGCTGGATCGCATAGACATGCAGATTGATGTGCCGAGGGTGTCGCCCACGGAGCTCGGGGATTTGTCA
GCGGGGGAGCCTACCGCCGCCGTTGCCCGGCGGGCGGCCGATGCCCGTCAGCGCCAGCTTGCGCGTGACGGCATGGTAGC
CGCCCATATCCCGGCGAGGGAGGTAGAAAAGCGCTGCCCGGTGGATCAGCGGGGCAGGATCCTGCTGAGCCGGGCCTGCG
ACCGGCTCAACCTGTCCGCCCGTGCGTTTCATCGCTGCCTGCGCGTCGCCCGGACCATCGCCGACCTGGAAAACTCCGAT
GGGATTGGCGAACGTCACATCGCCGAAGCATTGGGCTATCGCGAGCAGATCAGACCGTCAGATAGCGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B8JMC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.307

99.205

0.529
  comM Vibrio campbellii strain DS40M4

52.209

99.006

0.517
  comM Haemophilus influenzae Rd KW20

49.901

100

0.501
  comM Glaesserella parasuis strain SC1401

47.695

99.205

0.473
  comM Legionella pneumophila str. Paris

46.707

99.602

0.465
  comM Legionella pneumophila strain ERS1305867

46.707

99.602

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.058

98.807

0.425

Multiple sequence alignment