Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   GJS33_RS06825 Genome accession   NZ_CP046041
Coordinates   1451669..1452391 (-) Length   240 a.a.
NCBI ID   WP_042670937.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446669..1457391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS06800 (GJS33_06800) pstB 1446834..1447586 (-) 753 WP_154299064.1 phosphate ABC transporter ATP-binding protein PstB -
  GJS33_RS06805 (GJS33_06805) pstA 1447588..1448403 (-) 816 WP_012679824.1 phosphate ABC transporter permease PstA -
  GJS33_RS06810 (GJS33_06810) pstC 1448396..1449259 (-) 864 WP_154299065.1 phosphate ABC transporter permease subunit PstC -
  GJS33_RS06815 (GJS33_06815) - 1449329..1450201 (-) 873 WP_154299066.1 substrate-binding domain-containing protein -
  GJS33_RS06820 (GJS33_06820) pnpS 1450360..1451685 (-) 1326 WP_154299067.1 two-component system histidine kinase PnpS -
  GJS33_RS06825 (GJS33_06825) vicR 1451669..1452391 (-) 723 WP_042670937.1 response regulator transcription factor Regulator
  GJS33_RS09845 - 1452563..1452718 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  GJS33_RS06830 (GJS33_06830) - 1452759..1453661 (+) 903 WP_012677658.1 permease -
  GJS33_RS06835 (GJS33_06835) - 1453661..1454476 (+) 816 WP_014623169.1 TIGR03943 family putative permease subunit -
  GJS33_RS06840 (GJS33_06840) - 1454662..1456083 (-) 1422 WP_012679829.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28093.51 Da        Isoelectric Point: 6.1653

>NTDB_id=400529 GJS33_RS06825 WP_042670937.1 1451669..1452391(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEIVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=400529 GJS33_RS06825 WP_042670937.1 1451669..1452391(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATAGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAGCTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAAGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.444

97.5

0.433
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment