Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GJV52_RS06200 Genome accession   NZ_CP046027
Coordinates   1213250..1213537 (+) Length   95 a.a.
NCBI ID   WP_095503827.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1213664..1214341 1213250..1213537 flank 127


Gene organization within MGE regions


Location: 1213250..1214341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS06200 (GJV52_06200) comE 1213250..1213537 (+) 288 WP_095503827.1 helix-hairpin-helix domain-containing protein Machinery gene
  GJV52_RS06205 (GJV52_06205) - 1213664..1214341 (-) 678 WP_095503842.1 IS1595-like element ISNme3 family transposase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9925.64 Da        Isoelectric Point: 10.6062

>NTDB_id=400317 GJV52_RS06200 WP_095503827.1 1213250..1213537(+) (comE) [Neisseria brasiliensis strain N.177.16]
MKKIIFYALTTLVASVSAAAVNVNTASESELTALPGVGPAKAKAIVEYRKQHGSFKTLDELKNVKGIGEGIFSKLKNEAT
VAAPAKKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=400317 GJV52_RS06200 WP_095503827.1 1213250..1213537(+) (comE) [Neisseria brasiliensis strain N.177.16]
ATGAAGAAAATCATCTTCTACGCACTGACCACTTTAGTTGCTTCTGTCTCTGCTGCCGCAGTGAATGTCAACACCGCCTC
CGAAAGCGAACTGACGGCACTGCCGGGTGTAGGCCCTGCCAAAGCCAAAGCGATTGTAGAGTATCGCAAACAGCATGGTA
GCTTTAAGACCTTGGACGAACTGAAAAACGTCAAAGGCATTGGTGAAGGAATCTTCTCGAAATTAAAGAATGAAGCCACT
GTCGCTGCGCCGGCTAAGAAAGCTGCTCAGCCTGCTGTTAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.602

87.368

0.442
  comEA Staphylococcus aureus N315

60.656

64.211

0.389
  comEA Staphylococcus aureus MW2

60.656

64.211

0.389

Multiple sequence alignment