Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GJV52_RS03035 Genome accession   NZ_CP046027
Coordinates   597949..599445 (-) Length   498 a.a.
NCBI ID   WP_095501634.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 592949..604445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS03005 (GJV52_03005) - 593180..593377 (+) 198 WP_095502199.1 zinc-finger domain-containing protein -
  GJV52_RS03010 (GJV52_03010) - 593390..593737 (+) 348 WP_369832078.1 MliC family protein -
  GJV52_RS03015 (GJV52_03015) - 593900..594724 (-) 825 WP_095501637.1 undecaprenyl-diphosphate phosphatase -
  GJV52_RS03020 (GJV52_03020) - 594889..595848 (-) 960 WP_154212855.1 IS30 family transposase -
  GJV52_RS03025 (GJV52_03025) - 596007..596693 (-) 687 WP_100563548.1 thiol:disulfide interchange protein DsbA/DsbL -
  GJV52_RS03030 (GJV52_03030) - 596697..597746 (-) 1050 WP_095501635.1 SPOR domain-containing protein -
  GJV52_RS03035 (GJV52_03035) comM 597949..599445 (-) 1497 WP_095501634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GJV52_RS03040 (GJV52_03040) - 599459..599785 (-) 327 WP_095501633.1 accessory factor UbiK family protein -
  GJV52_RS03045 (GJV52_03045) metK 599885..601054 (-) 1170 WP_095501632.1 methionine adenosyltransferase -
  GJV52_RS03050 (GJV52_03050) - 601489..602367 (+) 879 WP_229436903.1 lysophospholipid acyltransferase family protein -
  GJV52_RS03055 (GJV52_03055) cysE 602428..603270 (-) 843 WP_100563550.1 serine O-acetyltransferase -
  GJV52_RS03060 (GJV52_03060) grpE 603456..604037 (+) 582 WP_100563552.1 nucleotide exchange factor GrpE -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53606.51 Da        Isoelectric Point: 6.5573

>NTDB_id=400307 GJV52_RS03035 WP_095501634.1 597949..599445(-) (comM) [Neisseria brasiliensis strain N.177.16]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQISMEKLAQYEFAGELALSGMLRPVRGALAMAWQGMQAGRAFVLPSENAQQAAVMKGITVYGAQSL
GEVAAHLNAIEPLTQTECPNLDRPSESVNLPDLSDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQELSHERPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPNKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLPAAELMQQ
QAGESSADVLQRVLAARDRQYARQGKVNAALSVTELDSVANIEQEACDALGAMLEKLSLSARSFHRIMRVARTLADLAGD
DAVDRSHVLKAISFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=400307 GJV52_RS03035 WP_095501634.1 597949..599445(-) (comM) [Neisseria brasiliensis strain N.177.16]
ATGTCGCTCGCTTTGGTTTACAGCCGCGCTTTAAGCGGTATGAATGCACCGTTGGTCGAGGTGGAAGCCCATCTTGCCAA
CGGTTTGCCGCATTTCAATATTGTCGGGCTGCCCGATACCGAAGTAAAGGAAAGCCGTGACCGCGTGCGTGCGGCGATTA
TCCAAAGCGGCTTTGATTTTCCGGCGAAAAAAATCACCGTCAATCTGGCACCGGCCGATTTGCCCAAAGAATCCGGCCGG
TTTGATTTGCCCATTGCCATCGGCATTTTGGCCGCTTCGGGGCAGATTTCGATGGAGAAACTGGCGCAATATGAATTTGC
CGGCGAATTGGCTTTGTCGGGGATGTTGCGGCCTGTGCGCGGCGCATTGGCGATGGCGTGGCAGGGTATGCAGGCAGGGC
GCGCTTTTGTGTTGCCGTCTGAAAACGCGCAACAAGCTGCTGTAATGAAAGGCATCACGGTTTACGGCGCGCAATCTTTA
GGCGAAGTGGCGGCGCATTTAAACGCCATTGAGCCTTTGACGCAAACCGAATGCCCGAATCTCGACAGGCCGTCTGAAAG
CGTAAACCTGCCGGATTTGAGTGATGTAAAAGGGCAACATACCGCACGTTTGGCTCTGGAAATTGCCGCTGCGGGCGGAC
ACAGCTTATTGATGATGGGTCCGCCGGGTACGGGTAAATCGATGTTATCGCAGCGTTTGCCGGGCATTTTGCCGCCGTTG
ACCGAAGACGAATTGGTCGAAGTGTGGGCGTTGCGCTCATTGCTGCCTAATCATCAACAGGAACTCAGCCATGAGAGGCC
GTTTCGTTCGCCCCATCACAGCGCCAGTTCGGCAGCAATGGTCGGCGGCGGCTCGGATCCAAGGCCGGGTGAGATTTCTT
TAGCGCATCATGGTGTGTTGTTTCTCGATGAATTGCCCGAGTTTGACCGCAAAGTTTTAGAAGTGTTGCGCGAGCCGTTA
GAAAACGGCGAAATCCATATTTCCCGCGCGGCGCGACAGGCGGTGTATCCGGCCAAATTCCAATTGGTGGCGGCGATGAA
TCCTTGTCCGTGCGGCTACCTTGGTCACCCGAACAAACCTTGCCGCTGCACGCCTGAGAGCGTGGCGCGTTACCGTAGCA
AAATTTCAGGGCCGCTGCTTGACCGTATTGATTTAACCATTGAAGTGCCTAGCTTGCCTGCCGCAGAATTGATGCAGCAA
CAAGCAGGCGAATCCAGCGCCGATGTGTTGCAGCGGGTGTTGGCGGCGCGCGACAGACAATATGCGCGGCAGGGCAAAGT
GAATGCCGCTTTGAGCGTGACCGAATTAGACAGCGTGGCCAATATCGAACAAGAAGCGTGCGATGCCTTGGGCGCGATGT
TGGAAAAATTATCGCTCTCGGCGCGCAGTTTTCACCGCATCATGCGCGTGGCACGCACCTTGGCCGATTTGGCTGGAGAC
GATGCCGTTGACCGCAGCCATGTATTGAAAGCCATCAGCTTCCGCAGGGCGTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.894

100

0.532
  comM Vibrio campbellii strain DS40M4

51.509

99.799

0.514
  comM Glaesserella parasuis strain SC1401

50

100

0.508
  comM Haemophilus influenzae Rd KW20

50.298

100

0.508
  comM Legionella pneumophila str. Paris

47.117

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.117

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

100

0.45

Multiple sequence alignment