Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GH913_RS21725 | Genome accession | NZ_CP046019 |
| Coordinates | 5022800..5024059 (+) | Length | 419 a.a. |
| NCBI ID | WP_033836749.1 | Uniprot ID | A0A7Z7NHG2 |
| Organism | Xanthomonas citri pv. malvacearum strain HD-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5017800..5029059
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GH913_RS21705 (GH913_21705) | - | 5019294..5019461 (-) | 168 | WP_033836746.1 | hypothetical protein | - |
| GH913_RS21710 (GH913_21710) | pilB | 5019739..5021475 (-) | 1737 | WP_033836748.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GH913_RS21715 (GH913_21715) | pilA2 | 5021517..5021930 (-) | 414 | WP_005921365.1 | pilin | Machinery gene |
| GH913_RS21720 (GH913_21720) | comP | 5022027..5022455 (-) | 429 | WP_005921364.1 | pilin | Machinery gene |
| GH913_RS21725 (GH913_21725) | pilC | 5022800..5024059 (+) | 1260 | WP_033836749.1 | type II secretion system F family protein | Machinery gene |
| GH913_RS21730 (GH913_21730) | - | 5024066..5024929 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| GH913_RS21735 (GH913_21735) | coaE | 5024943..5025551 (+) | 609 | WP_005915836.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 45878.36 Da Isoelectric Point: 10.3363
>NTDB_id=400217 GH913_RS21725 WP_033836749.1 5022800..5024059(+) (pilC) [Xanthomonas citri pv. malvacearum strain HD-1]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=400217 GH913_RS21725 WP_033836749.1 5022800..5024059(+) (pilC) [Xanthomonas citri pv. malvacearum strain HD-1]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.293 |
94.511 |
0.513 |
| pilC | Acinetobacter baylyi ADP1 |
52.97 |
96.42 |
0.511 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.605 |
96.659 |
0.499 |
| pilC | Acinetobacter baumannii D1279779 |
51.238 |
96.42 |
0.494 |
| pilG | Neisseria gonorrhoeae MS11 |
44.638 |
95.704 |
0.427 |
| pilG | Neisseria meningitidis 44/76-A |
44.14 |
95.704 |
0.422 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.465 |
0.396 |
| pilC | Vibrio campbellii strain DS40M4 |
39.702 |
96.181 |
0.382 |
| pilC | Thermus thermophilus HB27 |
37.905 |
95.704 |
0.363 |