Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LAC30SC_RS09510 Genome accession   NC_015214
Coordinates   1887424..1889586 (-) Length   720 a.a.
NCBI ID   WP_013642491.1    Uniprot ID   -
Organism   Lactobacillus amylovorus     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882424..1894586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAC30SC_RS09450 (LAC30SC_09685) - 1882500..1882730 (-) 231 WP_236945312.1 hypothetical protein -
  LAC30SC_RS09455 (LAC30SC_09690) - 1882999..1883421 (-) 423 WP_013642484.1 hypothetical protein -
  LAC30SC_RS09460 (LAC30SC_09695) - 1883448..1883642 (-) 195 WP_013642485.1 hypothetical protein -
  LAC30SC_RS09465 (LAC30SC_09700) - 1883775..1883984 (-) 210 WP_003549779.1 helix-turn-helix domain-containing protein -
  LAC30SC_RS09470 (LAC30SC_09705) - 1883999..1884538 (-) 540 WP_013642486.1 DUF2975 domain-containing protein -
  LAC30SC_RS09475 (LAC30SC_09710) - 1884543..1884725 (-) 183 WP_013642487.1 hypothetical protein -
  LAC30SC_RS09480 (LAC30SC_09715) - 1884892..1885107 (-) 216 WP_005721007.1 hypothetical protein -
  LAC30SC_RS09485 (LAC30SC_09720) - 1885177..1885371 (-) 195 WP_005721006.1 bacteriocin -
  LAC30SC_RS09490 (LAC30SC_09725) - 1885389..1885679 (-) 291 WP_013642488.1 Blp family class II bacteriocin -
  LAC30SC_RS09495 (LAC30SC_09730) - 1886233..1886430 (-) 198 WP_005721002.1 hypothetical protein -
  LAC30SC_RS09500 (LAC30SC_09735) - 1886431..1886790 (-) 360 WP_013642489.1 LPXTG cell wall anchor domain-containing protein -
  LAC30SC_RS09505 (LAC30SC_09740) - 1886817..1887413 (-) 597 WP_013642490.1 hypothetical protein -
  LAC30SC_RS09510 (LAC30SC_09745) comA 1887424..1889586 (-) 2163 WP_013642491.1 peptide cleavage/export ABC transporter Regulator
  LAC30SC_RS09515 (LAC30SC_09750) - 1889747..1890148 (-) 402 WP_013642492.1 hypothetical protein -
  LAC30SC_RS09520 (LAC30SC_09755) - 1890175..1890429 (-) 255 WP_013642493.1 Blp family class II bacteriocin -
  LAC30SC_RS09525 (LAC30SC_09760) - 1890726..1891892 (-) 1167 WP_013642494.1 IS256 family transposase -
  LAC30SC_RS09530 (LAC30SC_09765) - 1892092..1892331 (-) 240 WP_013642495.1 Blp family class II bacteriocin -
  LAC30SC_RS09535 (LAC30SC_09770) - 1892627..1892923 (-) 297 WP_223876349.1 hypothetical protein -
  LAC30SC_RS09540 (LAC30SC_09775) - 1892961..1893158 (-) 198 WP_013642497.1 Blp family class II bacteriocin -
  LAC30SC_RS09545 (LAC30SC_09780) - 1893168..1893410 (-) 243 WP_013642498.1 Blp family class II bacteriocin -
  LAC30SC_RS09550 (LAC30SC_09785) - 1893651..1893863 (-) 213 WP_013642499.1 hypothetical protein -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 81107.40 Da        Isoelectric Point: 8.3429

>NTDB_id=40016 LAC30SC_RS09510 WP_013642491.1 1887424..1889586(-) (comA) [Lactobacillus amylovorus]
MLIQYKSIYVPQVDESDCGVACLAMILKKYHSRVSLAHLRHSARTNLEGTTALGLVKTAQAFNLNTQAVKADMSLFDSDT
DIQYPFIVHVLKQGELLHYYVVIKATKKYLIIADPDPSVGLTKIAKDKFAQEWTGIALLMAPNDKFEPIKEKKRNLWSLF
PYMFKQKSLLTNIILASLLMTIISICSSYFLQGVIDTYIPNGTYQTLSILAIGLLIAYVFNSIFSYGQSLLLNVLGQRLS
IDLNLQYIRHLFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLSIVVVMGIVLAIQNSTLFVVTLLALPFY
AIVILGFTKKFDKMNNDQMESNAVLSSSVIEDIQGIETIKALNSEQTRYRKIDSQFVDYLKKSFRYSKTESLQSALKTFI
QLSLNVIILWVGAKVVMNGQMSIGQLMTFNALLSYFVDPLQSIINLQPTLQSANVAQNRLNEVYMVKSEFQKDAQIRDAK
QLAGEIEYHHVDYHYGYGVDVLKDINLKIEPNDKLAIVGMSGSGKSTMVKLLVDFFSPSKGKLTFNGFDSTKVDKHVLRS
YVNYVPQTPYIFSGTIKENLLLGSRPDITEKDILKACQIAEIESEIEQLPLQFETKMDENAKILSGGQKQRLTIARALLS
PAKILIFDEATSGLDTITEKKVVDNLMKLKDKTIIFIAHRLAIAQRTNNIVVVDHGQIVEQGSHEELMQKHGFYYNLVEN

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=40016 LAC30SC_RS09510 WP_013642491.1 1887424..1889586(-) (comA) [Lactobacillus amylovorus]
ATGTTAATACAATATAAATCAATCTATGTGCCACAAGTAGACGAATCAGATTGTGGTGTTGCCTGCTTAGCAATGATTCT
TAAAAAATATCATTCTAGAGTATCTTTAGCCCATTTGCGGCATAGCGCACGAACTAATTTGGAGGGAACTACCGCTTTAG
GTTTAGTAAAGACGGCTCAAGCTTTTAATTTAAATACGCAAGCCGTTAAAGCTGATATGTCATTGTTTGATTCAGATACA
GATATTCAGTATCCATTTATTGTTCATGTCTTAAAGCAAGGTGAATTACTGCATTATTACGTAGTAATTAAAGCTACTAA
AAAATACTTGATCATAGCTGATCCTGATCCCAGTGTTGGCTTAACCAAAATAGCAAAAGATAAATTTGCTCAAGAATGGA
CAGGAATCGCTTTGCTGATGGCACCTAACGATAAATTTGAGCCAATTAAAGAGAAAAAACGTAATCTATGGTCGCTATTT
CCTTATATGTTCAAGCAGAAAAGCTTGCTTACTAATATTATTCTAGCTTCTTTGTTAATGACGATTATTAGTATCTGTAG
TTCATATTTCTTACAAGGGGTTATTGATACATATATTCCTAATGGCACATATCAGACTCTTTCTATCCTGGCAATTGGCT
TATTGATAGCCTACGTATTTAATTCCATCTTTTCTTATGGTCAGAGCCTCTTACTTAATGTTCTAGGTCAAAGATTAAGT
ATTGACCTTAATTTACAGTATATTCGCCATCTTTTTGAACTACCTATGGAATTTTTTGTAACTCGCAGAACTGGTGAAAT
CACCTCACGTTTTTCGGATGCTAGTCGAATCATTGATGCCTTGGCCAGCACTGTGATTTCATTATTTCTTGATCTTTCAA
TTGTAGTTGTGATGGGAATCGTGCTGGCGATTCAGAACTCCACTTTATTTGTAGTAACATTGCTGGCCTTGCCTTTTTAT
GCGATTGTGATTCTTGGCTTTACTAAGAAATTCGATAAGATGAACAATGATCAGATGGAGAGTAACGCTGTATTAAGTTC
ATCAGTAATTGAAGATATTCAGGGAATTGAAACAATCAAAGCTTTAAATAGCGAACAAACACGTTATCGTAAGATTGATA
GTCAATTCGTCGATTACCTCAAGAAATCTTTTCGTTACAGTAAAACTGAATCTTTGCAGTCAGCTTTAAAGACCTTCATT
CAGTTATCTCTCAATGTAATTATCCTCTGGGTAGGGGCTAAGGTTGTAATGAACGGGCAGATGAGCATTGGTCAATTAAT
GACCTTCAACGCATTACTATCGTATTTTGTAGATCCACTTCAGAGCATTATTAATCTTCAACCAACTTTACAATCAGCTA
ATGTAGCACAAAATCGATTGAATGAAGTATACATGGTTAAGAGTGAGTTCCAGAAAGATGCTCAGATTAGGGATGCCAAG
CAATTAGCAGGTGAGATTGAATATCATCATGTTGACTACCATTATGGCTATGGAGTTGATGTATTAAAAGATATTAATTT
AAAAATCGAACCCAATGATAAGTTGGCAATCGTAGGGATGAGTGGCTCAGGTAAGTCTACTATGGTCAAACTTTTAGTTG
ATTTCTTCTCTCCAAGCAAAGGCAAGTTAACTTTTAATGGTTTTGATTCTACTAAAGTAGATAAGCATGTCTTACGGTCA
TACGTAAACTATGTTCCCCAAACACCATACATCTTCTCAGGAACAATCAAAGAAAATCTGCTTTTAGGTAGTCGACCAGA
TATTACAGAAAAAGATATATTGAAAGCCTGTCAGATAGCAGAAATTGAGTCTGAAATCGAACAATTACCACTGCAGTTTG
AAACCAAGATGGATGAAAATGCCAAGATTTTATCCGGTGGGCAAAAGCAAAGGCTAACTATTGCACGTGCATTATTGTCA
CCGGCTAAAATTTTAATTTTTGATGAAGCCACTAGCGGGCTTGATACGATTACAGAGAAAAAAGTAGTAGATAATTTAAT
GAAATTAAAAGATAAAACGATTATTTTTATTGCTCATCGTTTAGCAATTGCACAAAGGACTAACAATATTGTGGTTGTAG
ATCATGGTCAAATTGTTGAGCAAGGAAGTCATGAGGAATTAATGCAGAAACATGGCTTTTACTATAACTTAGTTGAGAAT
TAG

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(9-144)

ABC transporter (ABC_tran)

(502-652)

ABC transporter transmembrane region (ABC_membrane)

(171-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

56.503

99.306

0.561
  comA Streptococcus mitis NCTC 12261

56.224

99.306

0.558
  comA Streptococcus pneumoniae Rx1

55.944

99.306

0.556
  comA Streptococcus pneumoniae D39

55.944

99.306

0.556
  comA Streptococcus pneumoniae R6

55.944

99.306

0.556
  comA Streptococcus pneumoniae TIGR4

55.804

99.306

0.554
  comA Streptococcus gordonii str. Challis substr. CH1

55.664

99.306

0.553
  comA/nlmT Streptococcus mutans UA159

53.39

98.333

0.525

Multiple sequence alignment