Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DEIPR_RS08425 Genome accession   NC_015161
Coordinates   1768204..1769484 (-) Length   426 a.a.
NCBI ID   WP_013615403.1    Uniprot ID   F0RKT3
Organism   Deinococcus proteolyticus MRP     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1755868..1768204 1768204..1769484 flank 0


Gene organization within MGE regions


Location: 1755868..1769484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS08375 (IO79_RS08300) - 1757391..1758020 (+) 630 WP_083801556.1 TniB family NTP-binding protein -
  DEIPR_RS08380 - 1758033..1758735 (+) 703 Protein_1645 IS1 family transposase -
  DEIPR_RS08385 (IO79_RS08305) - 1758788..1759150 (+) 363 WP_169310683.1 hypothetical protein -
  DEIPR_RS08390 (Deipr_1654) - 1759113..1760600 (+) 1488 WP_083801557.1 TniQ family protein -
  DEIPR_RS08395 (Deipr_1655) - 1760623..1761369 (-) 747 WP_013615397.1 hypothetical protein -
  DEIPR_RS08400 (Deipr_1656) - 1761366..1763666 (-) 2301 WP_083801558.1 DEAD/DEAH box helicase family protein -
  DEIPR_RS08405 (Deipr_1657) - 1763663..1765624 (-) 1962 WP_148231818.1 site-specific DNA-methyltransferase -
  DEIPR_RS14600 (Deipr_1659) - 1765908..1766573 (-) 666 WP_013615401.1 S24 family peptidase -
  DEIPR_RS13970 (Deipr_1660) - 1766597..1768204 (-) 1608 WP_148231819.1 hypothetical protein -
  DEIPR_RS08425 (Deipr_1661) comM 1768204..1769484 (-) 1281 WP_013615403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 44608.30 Da        Isoelectric Point: 6.5860

>NTDB_id=39923 DEIPR_RS08425 WP_013615403.1 1768204..1769484(-) (comM) [Deinococcus proteolyticus MRP]
MLARVRSAALVGVDAVPVEVEVDVSPGLPSFMVVGLPDQAVSEARERVRAAIRNSGLPFPAARITVNLAPADLRKEGPLY
DLPIALGVLAAQEQVPLEALRGVICAGELALDGSLRPVAGAVNLALLAAELDLPALVPAGSAEEAALIEVPVYGAGTLLD
AVRHLTGQTPLPLTAPPQPEADWPAGPDLADVKGQTAAKRALEIAAAGGHNLLMVGSPGSGKTMLARRAAGLLPPLTRAE
ALEVTRIHSAAGLLTRGGLLGAAPYRHPHHTVSDAGLIGGGSIPKPGEVSLAHRGLLFLDEFPEFSRKALETLRQPLEDG
RVTISRARASVEYPARFQLIAAMNPCPCGHLGDPERPCTCTPAQRTRYQARLSGPLLDRIDLTVQVPRLTVDELTRAPQG
ESTAHVNKNANCDSYKLGETEVRRAA

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=39923 DEIPR_RS08425 WP_013615403.1 1768204..1769484(-) (comM) [Deinococcus proteolyticus MRP]
TTGCTAGCCCGTGTCCGCAGCGCGGCCCTGGTCGGGGTGGACGCGGTGCCGGTAGAGGTGGAAGTGGACGTTTCGCCGGG
CCTGCCGTCCTTTATGGTGGTGGGCCTGCCTGACCAGGCGGTGAGCGAGGCCCGCGAGCGGGTACGGGCGGCCATTCGCA
ATTCGGGCCTGCCTTTTCCGGCCGCCCGTATCACCGTGAATCTGGCTCCTGCCGACCTCCGCAAGGAAGGTCCGCTGTAC
GACCTGCCCATTGCTCTGGGCGTGCTGGCCGCGCAGGAGCAGGTGCCGCTGGAAGCGCTGCGCGGCGTCATCTGTGCCGG
TGAGCTGGCCCTGGACGGATCGCTGCGCCCGGTGGCGGGGGCGGTGAACCTGGCCCTGCTGGCCGCCGAGCTGGACCTGC
CCGCGCTGGTGCCTGCCGGCAGTGCCGAAGAAGCCGCGCTGATTGAGGTTCCCGTGTACGGAGCCGGCACCCTGCTGGAC
GCGGTGCGGCACCTGACGGGCCAGACCCCGCTGCCGCTGACCGCGCCCCCGCAGCCTGAAGCCGACTGGCCTGCTGGCCC
CGATCTGGCCGACGTCAAGGGCCAGACGGCTGCCAAGCGGGCTCTGGAAATCGCGGCGGCCGGTGGCCACAACCTGCTGA
TGGTGGGCAGTCCCGGCAGCGGCAAAACCATGCTGGCCCGCCGCGCCGCCGGGCTGCTGCCGCCGCTCACCCGCGCCGAG
GCGCTGGAGGTCACCCGCATTCATTCGGCGGCGGGGCTGCTCACGCGGGGTGGGCTGCTGGGAGCTGCGCCCTACCGCCA
CCCGCACCACACCGTGTCCGACGCCGGTCTGATCGGCGGCGGCAGTATTCCCAAGCCCGGTGAGGTGAGCCTGGCGCACC
GGGGGCTGCTGTTTCTGGACGAATTTCCGGAGTTTTCCCGCAAGGCCCTGGAAACCCTGCGCCAGCCGCTGGAAGACGGC
CGGGTGACCATCTCGCGTGCGCGGGCCAGTGTGGAGTACCCGGCCCGCTTTCAGCTGATCGCCGCGATGAATCCTTGCCC
CTGCGGGCACCTGGGCGACCCGGAGCGGCCCTGCACCTGCACGCCCGCGCAGCGCACCCGCTATCAGGCCCGGCTGAGCG
GCCCGCTGCTGGACCGCATTGACCTCACCGTGCAGGTGCCGCGCCTGACGGTGGACGAGCTGACCCGCGCTCCCCAGGGA
GAAAGCACCGCGCATGTCAATAAAAACGCTAACTGCGACTCGTACAAATTGGGTGAGACTGAAGTCAGGCGGGCGGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)

Subunit ChlI of Mg-chelatase (ChlI)

(20-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0RKT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

47.796

100

0.484
  comM Legionella pneumophila str. Paris

49.752

94.836

0.472
  comM Legionella pneumophila strain ERS1305867

49.752

94.836

0.472
  comM Vibrio campbellii strain DS40M4

48.426

96.948

0.469
  comM Vibrio cholerae strain A1552

48.411

96.009

0.465
  comM Glaesserella parasuis strain SC1401

47.826

97.183

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.715

96.479

0.451

Multiple sequence alignment