Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GH975_RS09665 Genome accession   NZ_CP045871
Coordinates   1905967..1906479 (-) Length   170 a.a.
NCBI ID   WP_153714325.1    Uniprot ID   -
Organism   Litorivicinus lipolyticus strain IMCC 1097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1900967..1911479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH975_RS09635 (GH975_09635) fabA 1901838..1902353 (+) 516 WP_153714319.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  GH975_RS09640 (GH975_09640) fabB 1902379..1903587 (+) 1209 WP_153714320.1 beta-ketoacyl-ACP synthase I -
  GH975_RS09645 (GH975_09645) - 1903777..1904199 (+) 423 WP_153714321.1 DsrE family protein -
  GH975_RS09650 (GH975_09650) ideA 1904196..1904888 (-) 693 WP_153714322.1 endonuclease Regulator
  GH975_RS09655 (GH975_09655) - 1904863..1905012 (-) 150 WP_153714323.1 hypothetical protein -
  GH975_RS09660 (GH975_09660) - 1905009..1905917 (-) 909 WP_153714324.1 sugar nucleotide-binding protein -
  GH975_RS09665 (GH975_09665) ssb 1905967..1906479 (-) 513 WP_153714325.1 single-stranded DNA-binding protein Machinery gene
  GH975_RS09670 (GH975_09670) - 1906509..1907840 (-) 1332 WP_153714326.1 MFS transporter -
  GH975_RS09675 (GH975_09675) uvrA 1907959..1910802 (+) 2844 WP_153714327.1 excinuclease ABC subunit UvrA -
  GH975_RS09680 (GH975_09680) - 1910799..1911350 (-) 552 WP_153714328.1 PQQ-dependent catabolism-associated CXXCW motif protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18240.22 Da        Isoelectric Point: 4.9561

>NTDB_id=398922 GH975_RS09665 WP_153714325.1 1905967..1906479(-) (ssb) [Litorivicinus lipolyticus strain IMCC 1097]
MARGINKVILVGNLGNDPEMRATNNGSQIANLSIATSESWRDKNTGEMQERTEWHRVVFFNRLAEICGQYLKKGSKVYVE
GSLRTRSWDDAQSGQKRYTTEIVGGEMQMLDGRGDNMGGGAPMGGGYQQNNAPQAPSAPRQAAPAPAPAQAASAPPPGFA
DDIGDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=398922 GH975_RS09665 WP_153714325.1 1905967..1906479(-) (ssb) [Litorivicinus lipolyticus strain IMCC 1097]
ATGGCACGAGGCATTAATAAGGTAATTTTGGTGGGCAATCTGGGTAACGACCCGGAAATGCGCGCAACCAACAACGGCTC
ACAGATTGCGAATTTGTCGATTGCGACGAGCGAATCATGGCGTGACAAGAACACCGGCGAAATGCAGGAACGGACCGAGT
GGCACCGCGTGGTGTTCTTTAATCGGTTAGCCGAAATTTGCGGTCAGTACCTGAAAAAAGGCAGCAAGGTCTACGTCGAG
GGCTCACTGCGTACTCGTTCGTGGGATGACGCCCAGTCCGGTCAGAAACGCTACACCACGGAAATCGTCGGCGGTGAAAT
GCAAATGCTGGATGGCCGTGGCGACAACATGGGCGGTGGCGCACCCATGGGCGGCGGTTATCAGCAAAACAATGCACCCC
AGGCGCCGTCGGCTCCTCGTCAGGCTGCACCGGCGCCCGCTCCGGCACAAGCGGCATCGGCACCGCCGCCTGGCTTTGCG
GATGACATTGGTGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.618
  ssb Vibrio cholerae strain A1552

51.366

100

0.553
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.488
  ssb Neisseria meningitidis MC58

46.369

100

0.488

Multiple sequence alignment