Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   GH975_RS09650 Genome accession   NZ_CP045871
Coordinates   1904196..1904888 (-) Length   230 a.a.
NCBI ID   WP_153714322.1    Uniprot ID   A0A5Q2Q9B4
Organism   Litorivicinus lipolyticus strain IMCC 1097     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899196..1909888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH975_RS09630 (GH975_09630) - 1900448..1901692 (+) 1245 WP_153714318.1 OmpP1/FadL family transporter -
  GH975_RS09635 (GH975_09635) fabA 1901838..1902353 (+) 516 WP_153714319.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  GH975_RS09640 (GH975_09640) fabB 1902379..1903587 (+) 1209 WP_153714320.1 beta-ketoacyl-ACP synthase I -
  GH975_RS09645 (GH975_09645) - 1903777..1904199 (+) 423 WP_153714321.1 DsrE family protein -
  GH975_RS09650 (GH975_09650) ideA 1904196..1904888 (-) 693 WP_153714322.1 endonuclease Regulator
  GH975_RS09655 (GH975_09655) - 1904863..1905012 (-) 150 WP_153714323.1 hypothetical protein -
  GH975_RS09660 (GH975_09660) - 1905009..1905917 (-) 909 WP_153714324.1 sugar nucleotide-binding protein -
  GH975_RS09665 (GH975_09665) ssb 1905967..1906479 (-) 513 WP_153714325.1 single-stranded DNA-binding protein Machinery gene
  GH975_RS09670 (GH975_09670) - 1906509..1907840 (-) 1332 WP_153714326.1 MFS transporter -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26652.29 Da        Isoelectric Point: 9.2153

>NTDB_id=398921 GH975_RS09650 WP_153714322.1 1904196..1904888(-) (ideA) [Litorivicinus lipolyticus strain IMCC 1097]
MPLTPRLISALLALSSWLATADDSVPWYTAMKRDATIVHAFDTRTFYCGCRFFDRRINAAACGYEIRKQPERGRRMEWEH
VMPAWQLGHQRACWRDGKRKGCERNDPEYLRMATDLHNLVPSVGELNGDRSNFPFGNIRGERRVYGACDFEVDFKARKAE
PPAHRQGDIARIYFYMRDRYGLLLGRSQTYLLTQWAAQDPVDQWERVRNQRIARIQGNANCYVGGCIPGN

Nucleotide


Download         Length: 693 bp        

>NTDB_id=398921 GH975_RS09650 WP_153714322.1 1904196..1904888(-) (ideA) [Litorivicinus lipolyticus strain IMCC 1097]
ATGCCCTTAACGCCCCGACTGATTAGCGCGCTATTGGCATTGAGCTCGTGGCTGGCGACGGCGGACGACTCGGTGCCCTG
GTACACCGCGATGAAGCGTGACGCGACCATCGTGCACGCCTTCGACACCCGTACATTTTATTGTGGCTGCCGGTTTTTCG
ATCGGCGAATCAATGCTGCGGCGTGCGGCTATGAAATTCGCAAACAACCCGAACGTGGCCGGCGCATGGAATGGGAGCAC
GTGATGCCAGCCTGGCAGCTGGGTCACCAGCGCGCGTGTTGGCGCGACGGCAAGCGCAAGGGTTGCGAGCGTAATGATCC
TGAGTATTTGCGCATGGCCACGGATTTGCACAACCTGGTGCCCTCGGTTGGCGAGTTGAATGGCGATCGTTCGAACTTTC
CGTTCGGTAACATACGCGGTGAACGCCGGGTCTACGGCGCCTGCGATTTTGAAGTCGACTTTAAGGCCCGCAAAGCCGAG
CCGCCGGCGCACCGGCAGGGTGATATCGCGCGTATCTATTTCTACATGCGCGACCGCTACGGGTTGTTGTTGGGCCGCTC
GCAGACCTATTTGTTAACGCAGTGGGCGGCGCAGGATCCGGTCGATCAGTGGGAGCGCGTGCGCAACCAGCGCATTGCCC
GGATCCAGGGCAATGCGAATTGCTATGTTGGTGGCTGTATTCCGGGCAACTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(60-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2Q9B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

59.292

98.261

0.583
  dns Aliivibrio fischeri ES114

45.982

97.391

0.448
  dns Vibrio parahaemolyticus RIMD 2210633

47.887

92.609

0.443
  dns Vibrio cholerae strain A1552

46.766

87.391

0.409

Multiple sequence alignment