Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | GH975_RS01125 | Genome accession | NZ_CP045871 |
| Coordinates | 220332..221450 (+) | Length | 372 a.a. |
| NCBI ID | WP_153712739.1 | Uniprot ID | - |
| Organism | Litorivicinus lipolyticus strain IMCC 1097 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 215332..226450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GH975_RS01095 (GH975_01095) | metW | 215462..216061 (-) | 600 | WP_153712733.1 | methionine biosynthesis protein MetW | - |
| GH975_RS01100 (GH975_01100) | - | 216058..217152 (-) | 1095 | WP_153712734.1 | homoserine O-acetyltransferase | - |
| GH975_RS01105 (GH975_01105) | - | 217153..217734 (-) | 582 | WP_153712735.1 | YggT family protein | - |
| GH975_RS01110 (GH975_01110) | proC | 217758..218558 (-) | 801 | WP_153712736.1 | pyrroline-5-carboxylate reductase | - |
| GH975_RS01115 (GH975_01115) | - | 218555..219253 (-) | 699 | WP_153712737.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GH975_RS01120 (GH975_01120) | pilT | 219285..220322 (+) | 1038 | WP_153712738.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GH975_RS01125 (GH975_01125) | pilU | 220332..221450 (+) | 1119 | WP_153712739.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GH975_RS01130 (GH975_01130) | - | 221523..222362 (+) | 840 | WP_153712740.1 | MBL fold metallo-hydrolase | - |
| GH975_RS01135 (GH975_01135) | - | 222327..223208 (-) | 882 | WP_153712741.1 | hypothetical protein | - |
| GH975_RS01140 (GH975_01140) | - | 223205..224173 (-) | 969 | WP_153712742.1 | aspartate carbamoyltransferase catalytic subunit | - |
| GH975_RS01145 (GH975_01145) | ruvX | 224217..224630 (-) | 414 | WP_153712743.1 | Holliday junction resolvase RuvX | - |
| GH975_RS01150 (GH975_01150) | - | 224627..225181 (-) | 555 | WP_153712744.1 | YqgE/AlgH family protein | - |
| GH975_RS01155 (GH975_01155) | - | 225178..226014 (-) | 837 | WP_153712745.1 | TonB family protein | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 40982.14 Da Isoelectric Point: 7.3072
>NTDB_id=398912 GH975_RS01125 WP_153712739.1 220332..221450(+) (pilU) [Litorivicinus lipolyticus strain IMCC 1097]
MKTAFHQLLVEMGRLGASDLFLSVGAPPSLKINGRMVQVGDQVMQSPALLEMIHDVIPAPAKRRFEAEREANFAFAPDGL
PRFRANAFFQRNTPSMVIRQIRADVPTRMELGLPPIIDELSLLKRGIVFVVGATGTGKSTTLASMVHQRNLFGSGHIITV
EDPIEFTHKHGGCIVTQREVGVDTDSFEAALTNTLRQAPDCIVIGEIRSKETMQQAITFAETGHLCLATLHANNANQAIE
RILHFFPSDEHDRIRLDLSLNLKAIVAQQLMPNVNRNGMALACEVLLNSPLVSEKIRTNEIHVLKAIMAKGGNEGMQTFD
QSLFQLYRDQRISYESALSHADSVNDLRLKIKLSRGSAPTGEGEFARAGLKD
MKTAFHQLLVEMGRLGASDLFLSVGAPPSLKINGRMVQVGDQVMQSPALLEMIHDVIPAPAKRRFEAEREANFAFAPDGL
PRFRANAFFQRNTPSMVIRQIRADVPTRMELGLPPIIDELSLLKRGIVFVVGATGTGKSTTLASMVHQRNLFGSGHIITV
EDPIEFTHKHGGCIVTQREVGVDTDSFEAALTNTLRQAPDCIVIGEIRSKETMQQAITFAETGHLCLATLHANNANQAIE
RILHFFPSDEHDRIRLDLSLNLKAIVAQQLMPNVNRNGMALACEVLLNSPLVSEKIRTNEIHVLKAIMAKGGNEGMQTFD
QSLFQLYRDQRISYESALSHADSVNDLRLKIKLSRGSAPTGEGEFARAGLKD
Nucleotide
Download Length: 1119 bp
>NTDB_id=398912 GH975_RS01125 WP_153712739.1 220332..221450(+) (pilU) [Litorivicinus lipolyticus strain IMCC 1097]
GTGAAAACTGCTTTCCATCAATTGTTGGTCGAAATGGGGCGCCTGGGGGCGTCGGATTTGTTTCTGTCGGTTGGCGCGCC
GCCGTCGCTGAAAATTAACGGCCGCATGGTCCAGGTGGGCGATCAGGTGATGCAGAGCCCTGCGCTGTTGGAGATGATTC
ACGATGTTATTCCGGCGCCAGCCAAGCGCCGGTTCGAGGCTGAGCGAGAGGCCAACTTTGCCTTTGCCCCGGACGGATTG
CCGCGCTTTAGGGCGAATGCGTTTTTTCAGCGCAATACGCCAAGCATGGTGATTCGCCAAATTCGTGCCGACGTGCCAAC
CCGAATGGAGTTGGGGCTGCCGCCGATTATTGACGAGCTGTCGCTGTTAAAACGCGGCATTGTGTTCGTGGTCGGTGCCA
CCGGCACTGGTAAGTCGACTACGCTGGCGAGCATGGTTCATCAGCGCAACCTGTTTGGGTCCGGGCACATCATCACGGTC
GAGGATCCGATCGAATTTACCCACAAACACGGCGGTTGCATCGTCACCCAGCGCGAAGTGGGGGTCGATACCGACTCGTT
CGAGGCGGCGCTGACCAACACGCTGCGCCAGGCCCCGGACTGCATTGTGATTGGCGAAATTCGTTCGAAGGAAACCATGC
AACAGGCGATTACCTTTGCCGAAACCGGGCACCTGTGTCTGGCGACCTTGCACGCCAACAATGCCAACCAGGCGATCGAG
CGGATCCTGCACTTTTTCCCCAGCGACGAGCACGACCGGATTCGCTTGGATTTGTCGCTAAACCTAAAAGCCATTGTCGC
CCAGCAACTGATGCCCAACGTCAATCGCAACGGCATGGCGCTGGCCTGTGAAGTGCTGCTGAATTCGCCGCTGGTCAGCG
AAAAAATCCGTACCAACGAGATTCATGTGTTGAAAGCGATCATGGCCAAGGGTGGCAATGAGGGCATGCAGACCTTTGAT
CAGTCGCTGTTCCAGCTCTACCGAGACCAGCGCATCAGCTACGAGTCGGCGCTGTCGCACGCGGACAGCGTCAATGATTT
GCGTCTGAAAATTAAACTCAGTCGGGGCAGTGCGCCGACCGGGGAGGGCGAGTTTGCGCGCGCCGGATTGAAGGACTAA
GTGAAAACTGCTTTCCATCAATTGTTGGTCGAAATGGGGCGCCTGGGGGCGTCGGATTTGTTTCTGTCGGTTGGCGCGCC
GCCGTCGCTGAAAATTAACGGCCGCATGGTCCAGGTGGGCGATCAGGTGATGCAGAGCCCTGCGCTGTTGGAGATGATTC
ACGATGTTATTCCGGCGCCAGCCAAGCGCCGGTTCGAGGCTGAGCGAGAGGCCAACTTTGCCTTTGCCCCGGACGGATTG
CCGCGCTTTAGGGCGAATGCGTTTTTTCAGCGCAATACGCCAAGCATGGTGATTCGCCAAATTCGTGCCGACGTGCCAAC
CCGAATGGAGTTGGGGCTGCCGCCGATTATTGACGAGCTGTCGCTGTTAAAACGCGGCATTGTGTTCGTGGTCGGTGCCA
CCGGCACTGGTAAGTCGACTACGCTGGCGAGCATGGTTCATCAGCGCAACCTGTTTGGGTCCGGGCACATCATCACGGTC
GAGGATCCGATCGAATTTACCCACAAACACGGCGGTTGCATCGTCACCCAGCGCGAAGTGGGGGTCGATACCGACTCGTT
CGAGGCGGCGCTGACCAACACGCTGCGCCAGGCCCCGGACTGCATTGTGATTGGCGAAATTCGTTCGAAGGAAACCATGC
AACAGGCGATTACCTTTGCCGAAACCGGGCACCTGTGTCTGGCGACCTTGCACGCCAACAATGCCAACCAGGCGATCGAG
CGGATCCTGCACTTTTTCCCCAGCGACGAGCACGACCGGATTCGCTTGGATTTGTCGCTAAACCTAAAAGCCATTGTCGC
CCAGCAACTGATGCCCAACGTCAATCGCAACGGCATGGCGCTGGCCTGTGAAGTGCTGCTGAATTCGCCGCTGGTCAGCG
AAAAAATCCGTACCAACGAGATTCATGTGTTGAAAGCGATCATGGCCAAGGGTGGCAATGAGGGCATGCAGACCTTTGAT
CAGTCGCTGTTCCAGCTCTACCGAGACCAGCGCATCAGCTACGAGTCGGCGCTGTCGCACGCGGACAGCGTCAATGATTT
GCGTCTGAAAATTAAACTCAGTCGGGGCAGTGCGCCGACCGGGGAGGGCGAGTTTGCGCGCGCCGGATTGAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.587 |
96.237 |
0.535 |
| pilU | Acinetobacter baylyi ADP1 |
55.556 |
94.355 |
0.524 |
| pilU | Vibrio cholerae strain A1552 |
54.706 |
91.398 |
0.5 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.638 |
87.634 |
0.374 |