Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   APZ19_RS17155 Genome accession   NZ_CP045859
Coordinates   3654964..3656487 (-) Length   507 a.a.
NCBI ID   WP_054824634.1    Uniprot ID   A0AAP9KBJ8
Organism   Vibrio owensii strain SH14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3649964..3661487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS17135 (APZ19_17135) - 3651250..3652236 (+) 987 WP_054824630.1 serine/threonine protein kinase -
  APZ19_RS17140 (APZ19_17140) - 3652271..3652873 (+) 603 WP_054824631.1 thiol:disulfide interchange protein DsbA/DsbL -
  APZ19_RS17145 (APZ19_17145) - 3652915..3653793 (-) 879 WP_054824632.1 acyltransferase -
  APZ19_RS17150 (APZ19_17150) - 3653958..3654914 (+) 957 WP_054824633.1 DUF2860 domain-containing protein -
  APZ19_RS17155 (APZ19_17155) comM 3654964..3656487 (-) 1524 WP_054824634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  APZ19_RS17160 (APZ19_17160) ilvG 3656950..3658596 (+) 1647 WP_005440785.1 acetolactate synthase 2 catalytic subunit -
  APZ19_RS17165 (APZ19_17165) ilvM 3658608..3658892 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  APZ19_RS17170 (APZ19_17170) ilvE 3658905..3659843 (+) 939 WP_009708024.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54951.11 Da        Isoelectric Point: 9.7259

>NTDB_id=398772 APZ19_RS17155 WP_054824634.1 3654964..3656487(-) (comM) [Vibrio owensii strain SH14]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRAVKGVLPAALAVNKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSV
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKQRVNQARESMVKRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=398772 APZ19_RS17155 WP_054824634.1 3654964..3656487(-) (comM) [Vibrio owensii strain SH14]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACGCTAGTGGGTCTACCGGAAACGACAGTAAAAGAATCCAAAGATCGCGTCCGCAGTGCGATCG
TTAATTCCAACTTTCAATTCCCTGCCAAGCGAATTACGGTAAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGACGC
TTCGATCTGCCGATTGCATTAGGGATTTTGGCCGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGTGGATTAAGAGCTGTAAAAGGCGTGCTGCCCGCTGCGTTGGCTGTGAACAAAAAACAGC
GCCGTTTAGTAGTGCCTCATGCCAATGGTGATCAAGCGGCATTAGTGGGTAAAGAGCAGCACAAATCTGCTCAATCGCTA
TTGGAAGTTTGTGCTGAGTTGTGTGGCCAACATCAATTGAATTTGTATCAAACTCCGAAGAAAAAAGAGACTAAAACACA
CGGACGAGACTTACAGGATATTATCGGTCAACAGCAAGGCAAACGCGCTCTAGAGATCGCTGCAGCAGGCAATCACAATC
TACTGTTTCTCGGCCCACCTGGTACGGGAAAAACCATGCTGGCATCACGCCTGTGTGACTTGTTACCTGAGATGAGTGTT
GAAGAGGCAATGGAAACGGCTTCTGTGGCATCACTAACCCAAAGTGAAATCAATGAGCACAACTGGAAGACGCGACCGTT
TCGCGCGCCGCACCATTCAAGCTCAATGGCAGCGCTTGTAGGGGGCGGCTCTGTGCCTAGGCCGGGTGAGATTTCATTAG
CGCACAATGGTTTGTTGTTCCTCGACGAGATGCCTGAGTTTGACCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCTGGTGAAATCATTATCTCTCGCGCGCAGGGTAAAACCCGTTTTCCGGCTCGATTCCAATTGGTTGGTGCATTGAACCC
AAGCCCGACAGGGTACTACGAGGGCAATCAAGCTCGGACAAACCCGCAAGCAATCCTGCGTTATCTTGGTCGGTTATCAG
GCCCGCTTCTTGATCGCTTTGATATGTCGTTAGAGATTCCCGCATTGCCAAAAGGCACACTTGCTGAAGGGGGCGATCGA
GGAGAGCCTACCGCTGTAGTTAAGCAAAGAGTCAATCAGGCCAGAGAAAGCATGGTGAAACGCAGTGGTAAAGTGAACGC
GTTATTGGGTAGTCGAGAAATTGAAGCCTTTTGCCCGCTGCAAAAAAGCGACGCTGAGTTTTTAGAAAATGCGCTGCATC
GCCTTGGATTATCGATTCGTGCTTACCATCGCATCATCAAAGTCGCACGTACTATTGCTGATCTGGAAGGTTCACCACAA
ATTGAGCGAACACATCTGGCAGAAGCTTTAGGTTATAGGGCAATGGATAGGCTGCTCAAGCAGTTGACGGCTCAAGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

97.239

100

0.972
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

63.725

100

0.641
  comM Legionella pneumophila str. Paris

49.598

98.225

0.487
  comM Legionella pneumophila strain ERS1305867

49.598

98.225

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.922

100

0.442

Multiple sequence alignment