Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GII23_RS21805 Genome accession   NZ_CP045858
Coordinates   4637026..4638522 (+) Length   498 a.a.
NCBI ID   WP_061337908.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain EC28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4632026..4643522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII23_RS21775 (GII23_21710) sutA 4632311..4632640 (-) 330 WP_061337905.1 transcriptional regulator SutA -
  GII23_RS21780 (GII23_21715) - 4632716..4633141 (-) 426 WP_165564101.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GII23_RS21785 (GII23_21720) - 4633286..4634536 (-) 1251 WP_165564102.1 ammonium transporter -
  GII23_RS21790 (GII23_21725) - 4634648..4635964 (-) 1317 WP_043218201.1 ammonium transporter -
  GII23_RS21795 (GII23_21730) glnK 4636002..4636340 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  GII23_RS21800 (GII23_21735) - 4636731..4636994 (+) 264 WP_043218200.1 accessory factor UbiK family protein -
  GII23_RS21805 (GII23_21740) comM 4637026..4638522 (+) 1497 WP_061337908.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GII23_RS21810 (GII23_21745) - 4638639..4640606 (+) 1968 WP_043218197.1 choline BCCT transporter BetT -
  GII23_RS21815 (GII23_21750) - 4640638..4642275 (-) 1638 WP_165564215.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52578.45 Da        Isoelectric Point: 8.1412

>NTDB_id=398732 GII23_RS21805 WP_061337908.1 4637026..4638522(+) (comM) [Stutzerimonas balearica strain EC28]
MSLALVHSRAQIGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGEPLAQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAADHL
LEVAAHFSGQTPLAPYQAEGLLRQELPYPDLADVQGQLAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLGE
QEALEVAAIRSVAGHGPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPDQIQRYRGKLSGPLLDRIDLHLTVAREATSLNAPRLE
GQSSAAVAGQVAAARAVQQARQGCANAFLDLAGLRQHCRLSTEDQQWLEKACERLALSLRAAHRLLKVARTLADLEQAPG
ITRAHLAEALQYRPAATT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=398732 GII23_RS21805 WP_061337908.1 4637026..4638522(+) (comM) [Stutzerimonas balearica strain EC28]
ATGTCCCTCGCCCTCGTCCACAGCCGTGCCCAGATAGGCGTCGAAGCGCCGGCGGTCACGGTCGAAGCTCATCTGGCCAA
CGGCCTGCCGTCACTGGCGCTGGTCGGACTGCCGGAGACGGCTGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
TCACCTCGGGGTTCGATTTTCCCGCCCGCCGCATCACGCTGAACCTGGCTCCGGCCGACCTACCGAAGGATGGCGGCCGT
TTCGACCTGGCCATTGCGCTCGGCATCCTCGCCGCCAGCGGCCAGCTGCCGGGCGAACCGCTGGCGCAACTGGAATGCCT
CGGCGAGCTCGCCCTGTCCGGCGCGTTGCGCCCGGTCCAGGGCGTACTGCCCGCAGCGCTGGCCGCACGCGCCGCCGGCC
GAGCCCTGCTGGTACCGCGAGCCAACGCCGAGGAGGCCAGCCTGGCCTCTGGCCTGACCGTCTACGCCGCCGATCATCTA
CTGGAGGTGGCTGCGCATTTCTCCGGTCAGACACCGCTGGCGCCCTACCAGGCCGAAGGTCTCCTGCGCCAGGAGCTGCC
CTACCCCGACCTGGCTGACGTGCAAGGCCAGCTGGCGGCCAAGCGCGGCCTGCTGATTGCCGCCGCCGGTGCCCACAACC
TGCTGTTCTCCGGCCCGCCCGGAACCGGCAAGACGCTGCTGGCCAGCCGTCTGCCGGGCCTCCTGCCGCCGCTCGGCGAG
CAGGAGGCGCTGGAGGTGGCCGCCATTCGATCGGTGGCCGGCCATGGTCCGCTCGAACACTGGCCACAACGACCGTTCCG
ACAGCCGCATCACAGCGCCTCGGGACCGGCGCTGGTCGGCGGTGGCAGCCGTCCGCAGCCCGGGGAAATCACCCTGGCGC
ACCAGGGTGTGCTGTTTCTCGACGAGCTCCCCGAGTTCGACCGCAAGGTGCTCGAGGTCCTGCGCGAACCGCTGGAATCC
GGACACATCGTCATCGCCCGGGCTCGCGACAAGGTGCGCTTTCCCGCGCGCTTCCAGCTGGTCGCCGCCATGAATCCCTG
CCCCTGCGGCTATCTCGGCGACCCCAGCGGCCGCTGCCGCTGCACGCCGGACCAGATCCAGCGCTATCGCGGCAAACTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACGGTCGCGCGCGAAGCCACCTCGCTGAACGCGCCGCGCCTCGAG
GGTCAGAGCAGCGCCGCGGTGGCCGGCCAGGTCGCCGCGGCACGTGCCGTCCAGCAGGCGCGTCAGGGTTGTGCCAATGC
CTTTCTCGATCTCGCCGGCCTGCGCCAGCACTGCCGGCTGAGCACGGAGGACCAGCAGTGGCTGGAGAAGGCCTGCGAGC
GGCTGGCGCTCTCGCTGCGCGCGGCGCATCGCCTGCTCAAGGTGGCACGCACCTTGGCCGACCTCGAACAGGCGCCGGGC
ATCACCCGCGCGCACCTCGCCGAAGCCCTGCAGTACCGCCCCGCGGCGACCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Glaesserella parasuis strain SC1401

53.707

100

0.538
  comM Legionella pneumophila str. Paris

52.8

100

0.53
  comM Legionella pneumophila strain ERS1305867

52.8

100

0.53
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.347

100

0.46

Multiple sequence alignment