Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GIJ09_RS07935 Genome accession   NZ_CP045832
Coordinates   1476783..1478279 (-) Length   498 a.a.
NCBI ID   WP_048339516.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1471783..1483279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS07900 (GIJ09_07900) mraZ 1471891..1472346 (-) 456 WP_149032473.1 division/cell wall cluster transcriptional repressor MraZ -
  GIJ09_RS07905 (GIJ09_07905) - 1472625..1473872 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  GIJ09_RS07920 (GIJ09_07920) - 1474313..1475134 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  GIJ09_RS07925 (GIJ09_07925) dsbA1 1475167..1475811 (-) 645 WP_003698856.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  GIJ09_RS07930 (GIJ09_07930) ftsN 1475814..1476677 (-) 864 WP_010360712.1 cell division protein FtsN -
  GIJ09_RS07935 (GIJ09_07935) comM 1476783..1478279 (-) 1497 WP_048339516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GIJ09_RS07940 (GIJ09_07940) - 1478293..1478613 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  GIJ09_RS07950 (GIJ09_07950) putP 1479101..1480627 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53396.40 Da        Isoelectric Point: 7.0324

>NTDB_id=398500 GIJ09_RS07935 WP_048339516.1 1476783..1478279(-) (comM) [Neisseria gonorrhoeae strain AUSMDU00010541]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
AEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHGASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRATRQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARGKQYARQGKVNAALSVSELDSQARIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=398500 GIJ09_RS07935 WP_048339516.1 1476783..1478279(-) (comM) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGTCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTAAAGGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCTGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCACCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGTTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCTCATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCCGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACAGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
GCCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACGGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGCTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAGGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGACGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCTGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGTGTCGCGCGTTACCGAAGCA
AAATTTCCGGTCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGTGCGTCCGTTTTGGAACGCGTCATCGCCGCCCGCGGCAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGTATCCAAAAAGAAGCGCAGGAAGCCTTGGGTAGCCTGC
TGGAAAAATTGTCTCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGCTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

51.911

99.799

0.518
  comM Haemophilus influenzae Rd KW20

49.299

100

0.494
  comM Glaesserella parasuis strain SC1401

48.611

100

0.492
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.744

100

0.432

Multiple sequence alignment