Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAHAQ_RS20170 Genome accession   NC_015061
Coordinates   4421182..4421724 (-) Length   180 a.a.
NCBI ID   WP_013577340.1    Uniprot ID   A0A0H3FKV8
Organism   Rahnella aceris     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4416182..4426724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAHAQ_RS20155 (Rahaq_4061) - 4417830..4418519 (-) 690 WP_013577337.1 YopT-type cysteine protease domain-containing protein -
  RAHAQ_RS20160 (Rahaq_4062) - 4418726..4419580 (+) 855 WP_013577338.1 LysR family transcriptional regulator -
  RAHAQ_RS20165 (Rahaq_4063) - 4419676..4421094 (+) 1419 WP_013577339.1 amidohydrolase family protein -
  RAHAQ_RS20170 (Rahaq_4064) ssb 4421182..4421724 (-) 543 WP_013577340.1 single-stranded DNA-binding protein Machinery gene
  RAHAQ_RS20175 (Rahaq_4065) uvrA 4422051..4424906 (+) 2856 WP_013577341.1 excinuclease ABC subunit UvrA -
  RAHAQ_RS20180 (Rahaq_4066) - 4424957..4425712 (-) 756 WP_013577342.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19001.01 Da        Isoelectric Point: 5.2456

>NTDB_id=39833 RAHAQ_RS20170 WP_013577340.1 4421182..4421724(-) (ssb) [Rahnella aceris]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRASGGAPAGGGQPSAGGQQGGWGQPQQPQGGNQFSGGQQSRPAAQ
NNAPAQNNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=39833 RAHAQ_RS20170 WP_013577340.1 4421182..4421724(-) (ssb) [Rahnella aceris]
ATGGCCAGCAGAGGCGTAAACAAAGTTATTCTCGTCGGTAATCTGGGGCAAGACCCGGAAGTCCGCTACATGCCTAACGG
CGGCGCGGTTGCCAACATCACTCTGGCAACGTCTGAAAGCTGGCGTGACAAAGCCACCGGCGAGCAGAAAGAAAAAACCG
AATGGCACCGTGTGGTGTTGTTCGGCAAATTAGCGGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAGGTTTACATC
GAAGGCGCATTGCAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTCGGCGGCCGTGCAAGCGGTGGCGCACCAGCAGGTGGCGGTCAGCCATCCGCAGGCGGCCAGC
AGGGCGGTTGGGGTCAGCCTCAGCAGCCACAAGGCGGCAACCAGTTCAGTGGCGGTCAGCAATCTCGTCCCGCTGCGCAA
AACAACGCGCCAGCACAGAACAACGAACCCCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3FKV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.75
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.589
  ssb Neisseria meningitidis MC58

47.486

99.444

0.472
  ssb Neisseria gonorrhoeae MS11

47.486

99.444

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.5

97.778

0.367

Multiple sequence alignment