Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GII77_RS12980 Genome accession   NZ_CP045825
Coordinates   2512286..2512582 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain 75     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2507286..2517582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS12935 (GII77_12935) tasA 2507694..2508479 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  GII77_RS12940 (GII77_12940) sipW 2508543..2509115 (-) 573 WP_003246088.1 signal peptidase I SipW -
  GII77_RS12945 (GII77_12945) tapA 2509099..2509860 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  GII77_RS12950 (GII77_12950) yqzG 2510132..2510458 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII77_RS12955 (GII77_12955) spoIITA 2510500..2510679 (-) 180 WP_029726723.1 YqzE family protein -
  GII77_RS12960 (GII77_12960) comGG 2510750..2511124 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  GII77_RS12965 (GII77_12965) comGF 2511125..2511508 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  GII77_RS12970 (GII77_12970) comGE 2511534..2511881 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GII77_RS12975 (GII77_12975) comGD 2511865..2512296 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  GII77_RS12980 (GII77_12980) comGC 2512286..2512582 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  GII77_RS12985 (GII77_12985) comGB 2512596..2513633 (-) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  GII77_RS12990 (GII77_12990) comGA 2513620..2514690 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  GII77_RS12995 (GII77_12995) - 2514903..2515100 (-) 198 WP_014480259.1 CBS domain-containing protein -
  GII77_RS13000 (GII77_13000) corA 2515102..2516055 (-) 954 WP_004399136.1 magnesium transporter CorA -
  GII77_RS13005 (GII77_13005) yqhB 2516198..2517526 (+) 1329 WP_029726716.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=398309 GII77_RS12980 WP_003230162.1 2512286..2512582(-) (comGC) [Bacillus subtilis strain 75]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=398309 GII77_RS12980 WP_003230162.1 2512286..2512582(-) (comGC) [Bacillus subtilis strain 75]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment