Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HR073_RS04960 Genome accession   NZ_CP054227
Coordinates   1078420..1079025 (+) Length   201 a.a.
NCBI ID   WP_001195026.1    Uniprot ID   A0A2T3RX43
Organism   Escherichia coli strain EcPF15     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1073420..1084025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR073_RS04930 (HR073_04925) rsmS 1074122..1074286 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  HR073_RS04935 (HR073_04930) priC 1074300..1074827 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  HR073_RS04940 (HR073_04935) ybaN 1074897..1075274 (+) 378 WP_001188905.1 DUF454 family protein -
  HR073_RS04945 (HR073_04940) apt 1075427..1075978 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HR073_RS04950 (HR073_04945) dnaX 1076107..1078038 (+) 1932 WP_000121995.1 DNA polymerase III subunit gamma/tau -
  HR073_RS04955 (HR073_04950) ybaB 1078091..1078420 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HR073_RS04960 (HR073_04955) recR 1078420..1079025 (+) 606 WP_001195026.1 recombination mediator RecR Machinery gene
  HR073_RS04965 (HR073_04960) htpG 1079135..1081009 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HR073_RS04970 (HR073_04965) adk 1081190..1081834 (+) 645 WP_001220233.1 adenylate kinase -
  HR073_RS04975 (HR073_04970) hemH 1081966..1082928 (+) 963 WP_001250117.1 ferrochelatase -
  HR073_RS04980 (HR073_04975) aes 1082925..1083884 (-) 960 WP_000801694.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21904.96 Da        Isoelectric Point: 5.0698

>NTDB_id=398310 HR073_RS04960 WP_001195026.1 1078420..1079025(+) (recR) [Escherichia coli strain EcPF15]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=398310 HR073_RS04960 WP_001195026.1 1078420..1079025(+) (recR) [Escherichia coli strain EcPF15]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTACCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGGCGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RX43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448

Multiple sequence alignment