Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   BSN5_RS17925 Genome accession   NC_014976
Coordinates   3417530..3418483 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis BSn5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3412530..3423483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS17900 (BSn5_17535) argF 3414362..3415321 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  BSN5_RS17905 (BSn5_17540) yjzC 3415407..3415586 (+) 180 WP_003245356.1 YjzC family protein -
  BSN5_RS17910 (BSn5_17545) yjzD 3415632..3415817 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  BSN5_RS17915 (BSn5_17550) - 3416066..3416800 (+) 735 WP_003245223.1 hypothetical protein -
  BSN5_RS17920 (BSn5_17555) - 3416882..3417439 (+) 558 WP_003232974.1 hypothetical protein -
  BSN5_RS17925 (BSn5_17560) med 3417530..3418483 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  BSN5_RS17930 (BSn5_17565) comZ 3418498..3418689 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  BSN5_RS17935 (BSn5_17570) yjzB 3418719..3418958 (-) 240 WP_003232972.1 spore coat protein YjzB -
  BSN5_RS17940 (BSn5_17575) fabH 3419123..3420061 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  BSN5_RS17945 (BSn5_17580) fabF 3420084..3421325 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  BSN5_RS17950 (BSn5_17585) yjaZ 3421401..3422186 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  BSN5_RS17955 (BSn5_17590) appD 3422378..3423364 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=39796 BSN5_RS17925 WP_003245494.1 3417530..3418483(+) (med) [Bacillus subtilis BSn5]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=39796 BSN5_RS17925 WP_003245494.1 3417530..3418483(+) (med) [Bacillus subtilis BSn5]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment