Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA1 | Type | Machinery gene |
| Locus tag | TSC_RS03790 | Genome accession | NC_014974 |
| Coordinates | 711534..712004 (-) | Length | 156 a.a. |
| NCBI ID | WP_015716680.1 | Uniprot ID | A0A430RWX4 |
| Organism | Thermus scotoductus SA-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 706534..717004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TSC_RS12585 (TSC_c07700) | - | 707150..707515 (+) | 366 | WP_015716677.1 | nucleotidyltransferase family protein | - |
| TSC_RS13425 | - | 707500..707859 (-) | 360 | WP_041438121.1 | type II secretion system protein | - |
| TSC_RS03780 (TSC_c07710) | comZ | 708078..709700 (-) | 1623 | WP_321162868.1 | competence protein ComZ | Machinery gene |
| TSC_RS12590 | pilA/pilA3 | 709752..710456 (-) | 705 | WP_081454906.1 | PilW family protein | Machinery gene |
| TSC_RS12595 | pilA/pilA2 | 710453..711013 (-) | 561 | WP_081454907.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| TSC_RS03785 (TSC_c07720) | - | 711010..711480 (-) | 471 | WP_041438123.1 | GspH/FimT family protein | - |
| TSC_RS03790 (TSC_c07730) | pilA/pilA1 | 711534..712004 (-) | 471 | WP_015716680.1 | GspH/FimT family protein | Machinery gene |
| TSC_RS03795 (TSC_c07740) | - | 712075..713265 (+) | 1191 | WP_015716681.1 | thiolase family protein | - |
| TSC_RS03800 (TSC_c07750) | - | 713366..713674 (-) | 309 | WP_015716682.1 | DUF503 domain-containing protein | - |
| TSC_RS03805 (TSC_c07760) | - | 713731..714090 (-) | 360 | WP_015716683.1 | DUF86 domain-containing protein | - |
| TSC_RS03810 (TSC_c07770) | - | 714087..714392 (-) | 306 | WP_015716684.1 | nucleotidyltransferase family protein | - |
| TSC_RS03815 (TSC_c07780) | - | 714402..716867 (-) | 2466 | WP_015716685.1 | outer membrane protein assembly factor | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 16820.54 Da Isoelectric Point: 11.5286
>NTDB_id=39716 TSC_RS03790 WP_015716680.1 711534..712004(-) (pilA/pilA1) [Thermus scotoductus SA-01]
MRREAFTLLELLIVLGILGVLLGLGLPLLSPNRLALDTATRSLAAQVTRARLEAIRQNTFAGLMIFTEGAGGYAIFTDKN
GNRAYDPGEAIQVVRFGQGDWARVRLDPSRSTLGNMPILFDSRGVPAKPITGTITLTSGTATRKVIISQQGRARVE
MRREAFTLLELLIVLGILGVLLGLGLPLLSPNRLALDTATRSLAAQVTRARLEAIRQNTFAGLMIFTEGAGGYAIFTDKN
GNRAYDPGEAIQVVRFGQGDWARVRLDPSRSTLGNMPILFDSRGVPAKPITGTITLTSGTATRKVIISQQGRARVE
Nucleotide
Download Length: 471 bp
>NTDB_id=39716 TSC_RS03790 WP_015716680.1 711534..712004(-) (pilA/pilA1) [Thermus scotoductus SA-01]
ATGCGCAGGGAGGCTTTTACCCTTCTTGAGCTTTTGATCGTCCTGGGAATTCTGGGAGTGCTCTTGGGCCTGGGCCTTCC
TCTCCTTTCCCCGAACCGCCTGGCCCTGGATACCGCCACCCGCTCCCTGGCCGCCCAGGTAACCCGGGCCAGGCTGGAGG
CCATACGCCAGAATACCTTTGCTGGTCTTATGATCTTCACCGAAGGCGCAGGAGGGTACGCCATCTTCACGGACAAAAAC
GGAAACCGGGCGTACGACCCGGGCGAAGCAATCCAGGTGGTGCGCTTCGGACAAGGCGACTGGGCCCGGGTACGCCTGGA
CCCCAGTCGCAGCACCCTGGGCAACATGCCCATCCTCTTTGATTCCCGGGGAGTTCCTGCCAAGCCCATCACCGGCACCA
TCACCCTTACCTCGGGCACTGCCACCCGCAAGGTGATCATCAGCCAGCAAGGCCGGGCCCGAGTGGAGTAG
ATGCGCAGGGAGGCTTTTACCCTTCTTGAGCTTTTGATCGTCCTGGGAATTCTGGGAGTGCTCTTGGGCCTGGGCCTTCC
TCTCCTTTCCCCGAACCGCCTGGCCCTGGATACCGCCACCCGCTCCCTGGCCGCCCAGGTAACCCGGGCCAGGCTGGAGG
CCATACGCCAGAATACCTTTGCTGGTCTTATGATCTTCACCGAAGGCGCAGGAGGGTACGCCATCTTCACGGACAAAAAC
GGAAACCGGGCGTACGACCCGGGCGAAGCAATCCAGGTGGTGCGCTTCGGACAAGGCGACTGGGCCCGGGTACGCCTGGA
CCCCAGTCGCAGCACCCTGGGCAACATGCCCATCCTCTTTGATTCCCGGGGAGTTCCTGCCAAGCCCATCACCGGCACCA
TCACCCTTACCTCGGGCACTGCCACCCGCAAGGTGATCATCAGCCAGCAAGGCCGGGCCCGAGTGGAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA1 | Thermus thermophilus HB27 |
74.016 |
81.41 |
0.603 |