Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   TTJL18_RS02225 Genome accession   NC_017587
Coordinates   386801..387385 (-) Length   194 a.a.
NCBI ID   WP_014629118.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 381801..392385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS02190 (TtJL18_0438) tmk 382241..382837 (-) 597 WP_014629114.1 dTMP kinase -
  TTJL18_RS02195 (TtJL18_0439) - 382838..383566 (-) 729 WP_014629115.1 Nif3-like dinuclear metal center hexameric protein -
  TTJL18_RS02200 (TtJL18_0440) - 383635..385440 (+) 1806 WP_014629116.1 S9 family peptidase -
  TTJL18_RS02205 (TtJL18_0441) - 385501..385767 (-) 267 WP_011173644.1 DUF3467 domain-containing protein -
  TTJL18_RS02210 (TtJL18_0442) - 385764..386102 (-) 339 WP_014629117.1 roadblock/LC7 domain-containing protein -
  TTJL18_RS02215 (TtJL18_0443) - 386087..386428 (-) 342 WP_011173642.1 roadblock/LC7 domain-containing protein -
  TTJL18_RS02220 (TtJL18_0444) - 386416..386799 (-) 384 WP_011173641.1 hypothetical protein -
  TTJL18_RS02225 (TtJL18_0445) recR 386801..387385 (-) 585 WP_014629118.1 recombination mediator RecR Machinery gene
  TTJL18_RS02230 (TtJL18_0446) - 387386..387703 (-) 318 WP_008633232.1 YbaB/EbfC family nucleoid-associated protein -
  TTJL18_RS02235 (TtJL18_0447) hemB 387734..388714 (+) 981 WP_041444421.1 porphobilinogen synthase -
  TTJL18_RS02240 (TtJL18_0448) - 388711..389904 (-) 1194 WP_014629120.1 MFS transporter -
  TTJL18_RS02245 (TtJL18_0449) - 389947..391662 (-) 1716 WP_014629121.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21179.33 Da        Isoelectric Point: 5.0317

>NTDB_id=39715 TTJL18_RS02225 WP_014629118.1 386801..387385(-) (recR) [Thermus thermophilus JL-18]
MRYPESLLKLTRALSRLPGIGPKTAQRLALHLAFHKEEAEALAEALEGLKRVQACRECGNLAEGELCPICQDEDRDRSLL
AVVESVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFRRLEGVEEVVLATSMTVEGEATALYLAEELKKRG
VRVTRPAYGLPVGGSLEYADEVTLGRALEGRRPV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=39715 TTJL18_RS02225 WP_014629118.1 386801..387385(-) (recR) [Thermus thermophilus JL-18]
ATGCGCTACCCGGAAAGCCTCCTCAAGCTCACCCGGGCCCTCTCCCGCCTCCCCGGCATAGGCCCCAAGACGGCCCAGCG
CCTGGCCCTCCACCTCGCCTTCCACAAGGAGGAGGCCGAGGCCCTGGCGGAGGCCCTGGAGGGGCTCAAGCGGGTCCAGG
CCTGCCGCGAGTGCGGCAACCTGGCCGAGGGGGAGCTCTGCCCCATCTGCCAGGACGAGGACCGGGACCGCTCCCTCCTC
GCCGTGGTGGAGAGCGTGGCCGACCTGTACGCCCTGGAGCGGAGCGGGGAGTTCCGGGGCCTCTACCACGTCCTGGGAGG
GGCCTTGAACCCCCTGGAGGGCATCGGCCCCAAGGAGCTCAACCTGGAGGGTCTCTTCCGGCGGCTGGAAGGCGTGGAGG
AGGTGGTCCTCGCCACCTCCATGACCGTGGAGGGGGAGGCCACAGCCCTCTACCTCGCCGAGGAGCTGAAGAAGCGGGGG
GTGCGGGTGACCCGGCCCGCCTACGGCCTCCCCGTGGGGGGGAGCCTGGAGTACGCCGACGAGGTGACCCTGGGCCGGGC
CCTGGAGGGGAGGCGGCCCGTCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-76)

Toprim domain (Toprim_4)

(80-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.102

100

0.557
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

100

0.49
  recR Streptococcus pneumoniae R6

45.128

100

0.454

Multiple sequence alignment