Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   TSC_RS03780 Genome accession   NC_014974
Coordinates   708078..709700 (-) Length   540 a.a.
NCBI ID   WP_321162868.1    Uniprot ID   -
Organism   Thermus scotoductus SA-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703078..714700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSC_RS03745 (TSC_c07650) leuC 703126..704538 (-) 1413 WP_015716672.1 3-isopropylmalate dehydratase large subunit -
  TSC_RS03750 (TSC_c07660) - 704707..705210 (+) 504 WP_015716674.1 DUF1640 domain-containing protein -
  TSC_RS03760 (TSC_c07680) trpS 705384..706397 (+) 1014 WP_015716675.1 tryptophan--tRNA ligase -
  TSC_RS03765 (TSC_c07690) - 706394..707095 (+) 702 WP_015716676.1 chromosome segregation protein ScpA -
  TSC_RS12585 (TSC_c07700) - 707150..707515 (+) 366 WP_015716677.1 nucleotidyltransferase family protein -
  TSC_RS13425 - 707500..707859 (-) 360 WP_041438121.1 type II secretion system protein -
  TSC_RS03780 (TSC_c07710) comZ 708078..709700 (-) 1623 WP_321162868.1 competence protein ComZ Machinery gene
  TSC_RS12590 pilA/pilA3 709752..710456 (-) 705 WP_081454906.1 PilW family protein Machinery gene
  TSC_RS12595 pilA/pilA2 710453..711013 (-) 561 WP_081454907.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  TSC_RS03785 (TSC_c07720) - 711010..711480 (-) 471 WP_041438123.1 GspH/FimT family protein -
  TSC_RS03790 (TSC_c07730) pilA/pilA1 711534..712004 (-) 471 WP_015716680.1 GspH/FimT family protein Machinery gene
  TSC_RS03795 (TSC_c07740) - 712075..713265 (+) 1191 WP_015716681.1 thiolase family protein -
  TSC_RS03800 (TSC_c07750) - 713366..713674 (-) 309 WP_015716682.1 DUF503 domain-containing protein -
  TSC_RS03805 (TSC_c07760) - 713731..714090 (-) 360 WP_015716683.1 DUF86 domain-containing protein -
  TSC_RS03810 (TSC_c07770) - 714087..714392 (-) 306 WP_015716684.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 58339.82 Da        Isoelectric Point: 8.5651

>NTDB_id=39715 TSC_RS03780 WP_321162868.1 708078..709700(-) (comZ) [Thermus scotoductus SA-01]
MLIIALLVFGTFFRSQIELWVTRNDTTSVQAFYAAEAGLQKYKAVLFQQHVWREQQINRGGGPGCYTSLVTGIDLYRNGN
LLTFQNNQVVLAQNEHVVDANGKPVGQYTVTLIRDAQDGELFTLVSKGTSSGAKATVQATFRLSNTGYLEQAIFAGTGQA
NKWLNGGATIRGGVYIVGDPSNPDQYVIQSNGNFTLFNSYNLNDYPGIAGHVESAYQQVNDLCASIRVQYGKISVGGSTQ
IGEPNNKVKGVFVGRGNQDITGQNVNICQNNKGVCTETMGPFDLSNPPPFPTLDTKLDSDTCSSYPTWRACLRDKAALRI
ERIGNIVNVAQPLNVTLSPSCLSAMTSGTLNLNTIDVDCTFTRLDGTRGGFKYTYSGGQGVLELYGDVTLEGLNVVFNRP
TAYKALSGNQKKATLVVLAKNGQGGNVDINGTLLPDPAHGPFPSHVLGIVAENNVYQRGQYVMAPVYAGGTFRVVKDNVL
FGSVISNQFCTTSAGNQTSCNAGQKAEVVYIRIPQQNRPVLLPSLKGGKPTFQVLSYERR

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=39715 TSC_RS03780 WP_321162868.1 708078..709700(-) (comZ) [Thermus scotoductus SA-01]
ATGCTGATCATAGCCCTCTTGGTCTTCGGCACCTTCTTCCGAAGCCAGATCGAACTTTGGGTTACCCGCAACGATACCAC
CTCAGTTCAGGCGTTCTACGCCGCAGAAGCAGGTTTACAGAAGTACAAAGCTGTACTTTTCCAGCAGCATGTGTGGCGCG
AGCAACAGATTAACCGTGGAGGCGGACCAGGGTGTTACACTTCTCTAGTAACAGGTATAGATCTGTACCGAAACGGAAAC
CTCCTCACCTTTCAGAATAACCAAGTCGTCCTGGCACAAAATGAGCACGTGGTTGACGCCAATGGGAAACCTGTGGGCCA
ATACACGGTTACCCTCATCAGAGACGCCCAGGATGGTGAGCTTTTCACCCTTGTGTCGAAAGGTACTTCCAGCGGTGCCA
AAGCTACAGTCCAAGCCACCTTCCGACTGAGCAATACTGGCTATCTCGAGCAAGCCATTTTTGCTGGAACAGGTCAAGCC
AACAAGTGGCTCAATGGTGGAGCCACCATCCGGGGAGGAGTTTATATCGTAGGCGACCCCTCTAATCCTGATCAGTATGT
GATTCAAAGCAACGGCAATTTTACTTTGTTTAACTCCTATAACCTCAATGACTACCCAGGGATAGCTGGCCATGTAGAAA
GCGCTTATCAGCAAGTGAACGACCTCTGTGCCAGTATTCGGGTGCAATACGGAAAGATCTCCGTTGGGGGAAGCACCCAA
ATCGGAGAGCCTAATAATAAGGTCAAGGGAGTCTTCGTAGGAAGAGGCAACCAAGACATTACGGGCCAAAACGTCAACAT
CTGTCAAAACAACAAGGGAGTCTGTACAGAAACCATGGGTCCTTTTGATCTCTCCAATCCCCCACCCTTTCCCACCTTGG
ATACCAAGCTAGATTCGGATACCTGCAGCAGTTACCCAACGTGGCGAGCCTGTCTGCGGGACAAAGCCGCATTACGGATC
GAGCGTATAGGCAACATTGTAAATGTTGCCCAGCCTCTAAACGTTACCCTCAGTCCCTCCTGCCTTTCTGCCATGACGTC
CGGCACCCTTAACCTAAACACCATTGATGTAGACTGCACCTTCACCCGTTTAGATGGAACTCGGGGAGGCTTTAAATACA
CCTATTCGGGAGGCCAGGGCGTTCTGGAGCTTTATGGTGATGTGACCCTCGAGGGTCTGAACGTGGTCTTCAACCGGCCC
ACGGCTTACAAAGCCCTGTCCGGAAACCAGAAGAAAGCTACCCTTGTTGTGTTAGCTAAAAACGGCCAAGGCGGCAATGT
AGACATAAACGGTACTCTACTCCCCGACCCAGCCCACGGCCCCTTTCCCAGCCATGTCCTAGGAATAGTCGCAGAAAACA
ACGTTTACCAGAGGGGGCAGTACGTGATGGCACCAGTCTACGCAGGGGGAACCTTCCGGGTGGTTAAGGACAATGTTCTC
TTTGGCTCAGTAATCAGCAACCAGTTCTGCACTACCAGCGCAGGTAACCAGACCAGCTGCAACGCCGGGCAGAAGGCGGA
GGTGGTGTACATCCGCATCCCCCAGCAAAACCGCCCTGTATTATTACCTAGCCTCAAAGGCGGAAAACCCACCTTCCAGG
TGCTCTCCTATGAGCGGCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

75.185

100

0.752

Multiple sequence alignment