Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GH771_RS17435 Genome accession   NZ_CP045769
Coordinates   3756585..3758105 (-) Length   506 a.a.
NCBI ID   WP_153689229.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain MiY-F     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3751585..3763105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH771_RS17425 (GH771_17425) hdfR 3755274..3756095 (-) 822 WP_006179201.1 HTH-type transcriptional regulator HdfR -
  GH771_RS17430 (GH771_17430) - 3756214..3756552 (+) 339 WP_006179202.1 DUF413 domain-containing protein -
  GH771_RS17435 (GH771_17435) comM 3756585..3758105 (-) 1521 WP_153689229.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GH771_RS17440 (GH771_17440) ilvL 3758447..3758545 (+) 99 WP_001311244.1 ilv operon leader peptide -
  GH771_RS23510 ilvX 3758632..3758682 (+) 51 WP_193749778.1 peptide IlvX -
  GH771_RS17445 (GH771_17445) ilvG 3758685..3760331 (+) 1647 WP_153689230.1 acetolactate synthase 2 catalytic subunit -
  GH771_RS17450 (GH771_17450) ilvM 3760328..3760591 (+) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  GH771_RS17455 (GH771_17455) - 3760610..3761539 (+) 930 WP_006179207.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55020.11 Da        Isoelectric Point: 7.6079

>NTDB_id=397006 GH771_RS17435 WP_153689229.1 3756585..3758105(-) (comM) [Enterobacter cancerogenus strain MiY-F]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNASRLGSYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENAAEVSLIAEKGCLVAGHL
QEVCAYLEKRHELAEPEECHDTLPAPADDLSDILGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAILSLVNATSLHKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAKFQLVAAMNPSPTGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRHPDARG
ESTAQVRERVIAAQERQYARQGRLNARLDNTGIRQWCPLKTEDAGWLEETLQRFGLSIRAWQRLLKVARTVADMEGCPDI
ERQHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=397006 GH771_RS17435 WP_153689229.1 3756585..3758105(-) (comM) [Enterobacter cancerogenus strain MiY-F]
ATGTCACTGTCAGTTGTCTATACGCGCGCGGCGCTCGGCGTAAAAGCTCCGCTCATTTCCGTTGAGGTGCATTTGAGCAA
CGGTTTACCCGGGCTAACGCTCGTGGGCCTGCCGGAAACGACGGTCAAAGAGGCCCGGGATCGGGTGCGCAGTGCAATTA
TCAATAGCGGTTATACCTTCCCGGCGAAGAAGATCACTATCAACCTCGCCCCAGCCGATTTGCCAAAGGAGGGCGGACGA
TATGATTTACCTATTGCTATCGCGCTTCTCGCCGCCTCTGAGCAGCTTAATGCCTCAAGGTTAGGCTCATATGAGTTCAT
CGGTGAACTGGCGCTTACAGGCGCGCTAAGAGGCGTTCCCGGTGCGATCTCGGGTGCGCTGGAAGCCATCCGCGCAGGAC
GGCAAATCATTGTGGCGAATGAGAATGCAGCAGAAGTTAGCCTCATAGCTGAGAAAGGCTGCCTGGTCGCCGGGCATTTG
CAGGAGGTTTGCGCGTATCTGGAAAAACGGCACGAACTGGCTGAGCCGGAAGAGTGTCACGACACGCTGCCGGCACCCGC
AGACGATCTGAGCGACATCCTGGGCCAGGAGCAGGGGAAGCGAGCGTTAGAGATCACTGCTGCAGGTGGACATAATCTTT
TGCTCATCGGCCCGCCCGGGACGGGTAAAACCATGCTGGCAAGCAGGCTGAGCGGTTTGCTGCCTCCGCTCAACAACCAT
GAAGCCCTCGAAAGCGCGGCTATTTTAAGCCTGGTCAATGCGACGTCTCTGCACAAACAATGGCGACGTCGCCCTTTCCG
ATCGCCGCACCATAGCGCCTCTCTCACGGCGATGGTGGGAGGCGGGGCAATCCCGGGGCCAGGTGAAATTTCACTGGCAC
ACAATGGCATTCTGTTTCTGGATGAACTGCCGGAATTTGAGCGGCGCGTGCTGGACGCGCTGCGCGAGCCGATAGAGTCG
GGAGAAATTCATATCTCCCGCACGCGGGCCAAAATTAGCTATCCCGCTAAATTTCAGCTGGTTGCGGCAATGAACCCCAG
CCCGACAGGGCATTACCAGGGCAATCACAACCGCTCGACGCCCGAGCAGACGCTGCGCTATCTGGGAAAACTCTCCGGCC
CCTTTCTCGACCGGTTTGATTTATCTCTTGAGATCCCTCTTCCTCCGCCTGGACTACTTCGACACCCCGACGCCAGAGGT
GAAAGCACAGCGCAGGTGCGCGAACGGGTTATTGCTGCACAGGAGCGGCAGTACGCGCGTCAGGGCAGGCTCAACGCGCG
TCTTGATAACACGGGTATACGTCAGTGGTGTCCTCTCAAAACCGAAGACGCAGGCTGGCTGGAAGAGACGTTGCAAAGGT
TTGGGCTTTCCATTCGCGCATGGCAGCGCCTGTTGAAAGTGGCAAGAACTGTCGCCGATATGGAGGGATGCCCCGATATT
GAGAGGCAGCATTTGCAGGAGGCACTGAGCTATCGAGCGATTGATCGCCTGCTGCTTCATCTGCAAAAGCTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.447

100

0.595
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435

Multiple sequence alignment