Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   FOC73_RS06945 Genome accession   NZ_CP053998
Coordinates   1423977..1424528 (-) Length   183 a.a.
NCBI ID   WP_157747901.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418977..1429528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS06930 (FOC73_06930) - 1419896..1420117 (+) 222 WP_022495973.1 garvicin Q family class II bacteriocin -
  FOC73_RS06935 (FOC73_06935) comA/nlmT 1420590..1422746 (+) 2157 WP_002883725.1 peptide cleavage/export ABC transporter Regulator
  FOC73_RS06940 (FOC73_06940) - 1422854..1423831 (+) 978 WP_254388427.1 HlyD family efflux transporter periplasmic adaptor subunit -
  FOC73_RS06945 (FOC73_06945) comD/comD3 1423977..1424528 (-) 552 WP_157747901.1 GHKL domain-containing protein Regulator
  FOC73_RS06950 (FOC73_06950) comE/blpR 1425182..1425919 (-) 738 WP_002883766.1 LytTR family DNA-binding domain-containing protein Regulator
  FOC73_RS06955 (FOC73_06955) - 1426648..1427460 (-) 813 WP_002883805.1 HAD family hydrolase -
  FOC73_RS06960 (FOC73_06960) - 1427669..1429090 (+) 1422 WP_002883789.1 NCS2 family permease -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 21281.59 Da        Isoelectric Point: 6.4922

>NTDB_id=396932 FOC73_RS06945 WP_157747901.1 1423977..1424528(-) (comD/comD3) [Streptococcus salivarius strain FDAARGOS_771]
MQEELNLQNNIRLKNLDTYNHKIEELYQTVRGFRHNYRNLLTTLKLGIDQEDMTIVKDIYTSILETSDKRLETKQFDLTQ
LINIQDNTLKSLLSAKFLQADDQNIDISLEIPSPITLEGMTILDFITVISILIDNAMEATVKAKKTKIMIAYIKQDKYQR
FIIKNSTKEESISITKIFQKGFS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=396932 FOC73_RS06945 WP_157747901.1 1423977..1424528(-) (comD/comD3) [Streptococcus salivarius strain FDAARGOS_771]
ATGCAAGAAGAACTAAATCTACAAAACAATATCAGGCTAAAAAATCTCGATACCTACAATCATAAAATTGAAGAGCTTTA
TCAAACCGTCCGTGGTTTTCGTCATAATTATAGAAACCTACTTACCACTCTGAAACTAGGCATTGATCAGGAAGACATGA
CAATAGTCAAGGATATCTACACTTCGATTTTGGAAACATCTGATAAAAGACTAGAAACCAAGCAATTTGACTTGACACAA
CTAATCAATATCCAAGATAATACTCTAAAAAGCCTCCTATCTGCCAAATTTCTCCAAGCAGATGACCAAAATATTGATAT
CTCCCTAGAAATTCCAAGTCCTATCACGTTAGAGGGAATGACTATTCTGGACTTTATCACTGTTATCTCTATACTGATAG
ACAATGCCATGGAAGCTACTGTAAAAGCTAAAAAAACTAAGATAATGATTGCTTATATTAAACAGGATAAATATCAACGC
TTCATTATCAAAAATAGTACCAAAGAAGAGAGTATCTCTATTACCAAAATCTTTCAAAAAGGTTTCTCTTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(121-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

43.407

99.454

0.432
  comD/comD1 Streptococcus equinus JB1

45.614

93.443

0.426
  comD/blpH Streptococcus mutans UA159

40.437

100

0.404
  comD/comD2 Streptococcus equinus JB1

42.197

94.536

0.399