Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   FOC73_RS06950 Genome accession   NZ_CP053998
Coordinates   1425182..1425919 (-) Length   245 a.a.
NCBI ID   WP_002883766.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420182..1430919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS06935 (FOC73_06935) comA/nlmT 1420590..1422746 (+) 2157 WP_002883725.1 peptide cleavage/export ABC transporter Regulator
  FOC73_RS06940 (FOC73_06940) - 1422854..1423831 (+) 978 WP_254388427.1 HlyD family efflux transporter periplasmic adaptor subunit -
  FOC73_RS06945 (FOC73_06945) comD/comD3 1423977..1424528 (-) 552 WP_157747901.1 GHKL domain-containing protein Regulator
  FOC73_RS06950 (FOC73_06950) comE/blpR 1425182..1425919 (-) 738 WP_002883766.1 LytTR family DNA-binding domain-containing protein Regulator
  FOC73_RS06955 (FOC73_06955) - 1426648..1427460 (-) 813 WP_002883805.1 HAD family hydrolase -
  FOC73_RS06960 (FOC73_06960) - 1427669..1429090 (+) 1422 WP_002883789.1 NCS2 family permease -
  FOC73_RS06965 (FOC73_06965) tsaE 1429366..1429809 (+) 444 WP_002883769.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FOC73_RS06970 (FOC73_06970) - 1429802..1430323 (+) 522 WP_002883807.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28536.61 Da        Isoelectric Point: 7.0641

>NTDB_id=396933 FOC73_RS06950 WP_002883766.1 1425182..1425919(-) (comE/blpR) [Streptococcus salivarius strain FDAARGOS_771]
MDIYILEDNIIQQGRLEQALDKALRSYGETLDCVQTFEQSNQLLEYIKPANHQQLFFLDIEIKGKEKEGLHLGQTIRNKL
PDAHIVFVTSHSEFMPLTFSYQLFALDYIDKNLDEDSFQSKVAIALSYVAKQSIKKEEKFSFHSGTDHIDLSYDRLLYIE
TSAKRHYVILHGSHSIFEFRANISDLANANPKLFRCHRSYLINPDKLVRLNKTKREIEMSDGTNCLVSRRHIKAVLAFMY
EDKKI

Nucleotide


Download         Length: 738 bp        

>NTDB_id=396933 FOC73_RS06950 WP_002883766.1 1425182..1425919(-) (comE/blpR) [Streptococcus salivarius strain FDAARGOS_771]
ATGGATATCTACATTTTAGAGGACAACATAATACAGCAAGGTAGATTGGAACAGGCTCTGGATAAGGCTCTCAGATCCTA
TGGTGAGACACTAGACTGTGTCCAGACCTTTGAACAATCCAACCAACTTCTGGAATATATAAAGCCAGCCAACCATCAAC
AACTCTTTTTCTTGGATATTGAGATTAAAGGGAAAGAAAAAGAAGGACTCCATTTGGGACAAACCATCCGAAACAAACTA
CCAGATGCTCATATTGTCTTTGTAACCTCCCACTCAGAGTTTATGCCCTTAACTTTTAGTTACCAACTCTTTGCCCTAGA
CTATATCGACAAAAATCTAGATGAAGATTCTTTTCAATCAAAGGTCGCGATAGCCCTATCCTATGTCGCTAAGCAAAGTA
TAAAAAAAGAGGAAAAGTTCTCTTTTCATTCTGGAACCGACCATATCGATCTCTCCTATGACCGTTTGCTTTATATTGAA
ACATCTGCTAAAAGGCACTATGTTATCTTACACGGTTCCCATAGCATTTTTGAGTTTCGAGCCAATATCTCAGACTTAGC
TAATGCCAATCCTAAGCTCTTCCGCTGTCATCGCTCCTACCTAATCAACCCTGACAAATTGGTACGTCTCAATAAGACCA
AACGCGAAATCGAAATGTCAGACGGCACTAACTGTCTGGTATCTCGTAGACATATCAAGGCAGTCTTAGCCTTTATGTAT
GAGGATAAGAAGATATGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-235)

Response regulator receiver domain (Response_reg)

(4-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

37.247

100

0.376
  comE/comE2 Streptococcus equinus JB1

36.777

98.776

0.363
  comE/comE1 Streptococcus equinus JB1

36.929

98.367

0.363