Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VVMO6_RS00120 Genome accession   NC_014965
Coordinates   23799..25322 (+) Length   507 a.a.
NCBI ID   WP_013570878.1    Uniprot ID   -
Organism   Vibrio vulnificus MO6-24/O     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18799..30322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS00105 (VVM_00042) ilvE 20437..21375 (-) 939 WP_011151436.1 branched-chain-amino-acid transaminase -
  VVMO6_RS00110 (VVM_00044) ilvM 21387..21671 (-) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  VVMO6_RS00115 (VVM_00047) ilvG 21683..23329 (-) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  VVMO6_RS00120 (VVM_00048) comM 23799..25322 (+) 1524 WP_013570878.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VVMO6_RS00125 (VVM_00051) - 25361..26335 (-) 975 WP_044023790.1 DUF2860 domain-containing protein -
  VVMO6_RS00130 (VVM_00052) - 26478..27359 (+) 882 WP_011151432.1 acyltransferase -
  VVMO6_RS00135 (VVM_00055) - 27413..28018 (-) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  VVMO6_RS00140 (VVM_00056) - 28051..29037 (-) 987 WP_013570881.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54893.06 Da        Isoelectric Point: 8.7933

>NTDB_id=39654 VVMO6_RS00120 WP_013570878.1 23799..25322(+) (comM) [Vibrio vulnificus MO6-24/O]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAYLCGQQALALHQAPQREKPAQHHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGER
GEPTAVVKARVEQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=39654 VVMO6_RS00120 WP_013570878.1 23799..25322(+) (comM) [Vibrio vulnificus MO6-24/O]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCAGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAATTAGCCTTAAGTGGTGAGCTGCGAGCTGTGAAAGGGGTCCTGCCAGCCGCACTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTGCCTCATGCTAATGGGGATCAAGCCGCCTTGGTGGGCAAAAACATGCATAAATCGGCGTGCTCACTG
ATTGAAGTTTGTGCTTACTTATGTGGTCAGCAAGCGCTGGCTTTGCATCAGGCGCCTCAGCGAGAAAAACCCGCGCAACA
TCATCGTGATTTACAAGACATCATAGGCCAGCAGCAAGGTAAGCGTGCGTTGGAAATTGCCGCTGCGGGCAATCACAATT
TACTTTTTTTAGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGCTTGCGAGATCTGCTGCCTGAAATGAGTGAG
GAAGAAGCGATGGAAACGGCGGCGGTGGCTTCTTTAACACAAAGTGATATCAATGAGCATAATTGGAAGCAACGGCCGTT
TCGCGCACCGCATCACTCAAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCACGTCCTGGAGAAATCTCACTCG
CCCACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGAGCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGAGCAGGCGAGAGAGCGAATGCAGCATCGCAATGGTAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACAGCGTTGCATC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.771

100

0.878
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

64.694

100

0.647
  comM Glaesserella parasuis strain SC1401

62.451

99.803

0.623
  comM Legionella pneumophila str. Paris

50.4

98.619

0.497
  comM Legionella pneumophila strain ERS1305867

50.4

98.619

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment