Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GFB47_RS01105 | Genome accession | NZ_CP045699 |
| Coordinates | 247411..247998 (+) | Length | 195 a.a. |
| NCBI ID | WP_153445877.1 | Uniprot ID | A0A5Q0TAH2 |
| Organism | Vibrio algicola strain SM1977 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 242411..252998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFB47_RS01090 (GFB47_01095) | - | 243037..245622 (-) | 2586 | WP_153445872.1 | penicillin-binding protein 1A | - |
| GFB47_RS01095 (GFB47_01100) | pilM | 245770..246834 (+) | 1065 | WP_153445874.1 | type IV pilus assembly protein PilM | Machinery gene |
| GFB47_RS01100 (GFB47_01105) | pilN | 246824..247411 (+) | 588 | WP_153445876.1 | PilN domain-containing protein | Machinery gene |
| GFB47_RS01105 (GFB47_01110) | pilO | 247411..247998 (+) | 588 | WP_153445877.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GFB47_RS01110 (GFB47_01115) | pilP | 247995..248504 (+) | 510 | WP_153445880.1 | pilus assembly protein PilP | Machinery gene |
| GFB47_RS01115 (GFB47_01120) | pilQ | 248542..250389 (+) | 1848 | WP_225874274.1 | type IV pilus secretin PilQ | Machinery gene |
| GFB47_RS01120 (GFB47_01125) | aroK | 250767..251285 (+) | 519 | WP_153448097.1 | shikimate kinase AroK | - |
| GFB47_RS01125 (GFB47_01130) | aroB | 251310..252401 (+) | 1092 | WP_153445882.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 22678.10 Da Isoelectric Point: 4.9243
>NTDB_id=396061 GFB47_RS01105 WP_153445877.1 247411..247998(+) (pilO) [Vibrio algicola strain SM1977]
MIDFRDLDFEEMPEWPVLPQVIVIGVLVLILQVFGAWFYLSPQHDELDQIRQQEVTLKSSIRIKAAKVAALPQLQAQLDE
LNTRYEFLLKQLPVQKELASMLSSVNDLGLKNDLSFTRVDWGEKQVQEFLYRLPLNIELTGAYDNIGQFSEAIAKLPRII
SLHDVEWNRVSQESGTLHFRVRAYTYQFKPEETKK
MIDFRDLDFEEMPEWPVLPQVIVIGVLVLILQVFGAWFYLSPQHDELDQIRQQEVTLKSSIRIKAAKVAALPQLQAQLDE
LNTRYEFLLKQLPVQKELASMLSSVNDLGLKNDLSFTRVDWGEKQVQEFLYRLPLNIELTGAYDNIGQFSEAIAKLPRII
SLHDVEWNRVSQESGTLHFRVRAYTYQFKPEETKK
Nucleotide
Download Length: 588 bp
>NTDB_id=396061 GFB47_RS01105 WP_153445877.1 247411..247998(+) (pilO) [Vibrio algicola strain SM1977]
ATGATCGACTTTCGTGATTTAGATTTTGAAGAAATGCCTGAGTGGCCAGTACTGCCACAGGTGATTGTGATTGGCGTGTT
GGTTCTGATTTTGCAAGTTTTTGGTGCTTGGTTTTATTTATCTCCTCAGCATGATGAGTTAGATCAAATCCGCCAACAAG
AAGTTACGCTCAAAAGCTCTATTCGGATTAAAGCGGCAAAAGTGGCTGCATTGCCTCAATTGCAAGCGCAGTTAGATGAA
TTGAATACACGTTACGAATTCTTATTGAAGCAGTTACCAGTACAAAAAGAATTGGCGAGCATGTTGTCATCCGTGAATGA
TTTAGGACTTAAAAATGACTTGTCTTTTACGCGTGTGGATTGGGGGGAAAAACAAGTACAGGAGTTTTTATATCGGCTGC
CACTCAATATTGAATTAACCGGTGCTTACGACAATATTGGTCAATTTTCTGAGGCGATAGCCAAATTGCCCCGCATCATT
AGTTTGCATGATGTGGAATGGAACCGTGTTAGTCAGGAGAGTGGCACCTTGCACTTTAGGGTTCGAGCTTACACCTATCA
ATTTAAACCGGAGGAGACTAAAAAATGA
ATGATCGACTTTCGTGATTTAGATTTTGAAGAAATGCCTGAGTGGCCAGTACTGCCACAGGTGATTGTGATTGGCGTGTT
GGTTCTGATTTTGCAAGTTTTTGGTGCTTGGTTTTATTTATCTCCTCAGCATGATGAGTTAGATCAAATCCGCCAACAAG
AAGTTACGCTCAAAAGCTCTATTCGGATTAAAGCGGCAAAAGTGGCTGCATTGCCTCAATTGCAAGCGCAGTTAGATGAA
TTGAATACACGTTACGAATTCTTATTGAAGCAGTTACCAGTACAAAAAGAATTGGCGAGCATGTTGTCATCCGTGAATGA
TTTAGGACTTAAAAATGACTTGTCTTTTACGCGTGTGGATTGGGGGGAAAAACAAGTACAGGAGTTTTTATATCGGCTGC
CACTCAATATTGAATTAACCGGTGCTTACGACAATATTGGTCAATTTTCTGAGGCGATAGCCAAATTGCCCCGCATCATT
AGTTTGCATGATGTGGAATGGAACCGTGTTAGTCAGGAGAGTGGCACCTTGCACTTTAGGGTTCGAGCTTACACCTATCA
ATTTAAACCGGAGGAGACTAAAAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
65.969 |
97.949 |
0.646 |
| pilO | Vibrio campbellii strain DS40M4 |
63.158 |
97.436 |
0.615 |