Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GFB47_RS01100 | Genome accession | NZ_CP045699 |
| Coordinates | 246824..247411 (+) | Length | 195 a.a. |
| NCBI ID | WP_153445876.1 | Uniprot ID | - |
| Organism | Vibrio algicola strain SM1977 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 241824..252411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFB47_RS01085 (GFB47_01090) | oxyR | 242019..242903 (+) | 885 | WP_153445871.1 | DNA-binding transcriptional regulator OxyR | - |
| GFB47_RS01090 (GFB47_01095) | - | 243037..245622 (-) | 2586 | WP_153445872.1 | penicillin-binding protein 1A | - |
| GFB47_RS01095 (GFB47_01100) | pilM | 245770..246834 (+) | 1065 | WP_153445874.1 | type IV pilus assembly protein PilM | Machinery gene |
| GFB47_RS01100 (GFB47_01105) | pilN | 246824..247411 (+) | 588 | WP_153445876.1 | PilN domain-containing protein | Machinery gene |
| GFB47_RS01105 (GFB47_01110) | pilO | 247411..247998 (+) | 588 | WP_153445877.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GFB47_RS01110 (GFB47_01115) | pilP | 247995..248504 (+) | 510 | WP_153445880.1 | pilus assembly protein PilP | Machinery gene |
| GFB47_RS01115 (GFB47_01120) | pilQ | 248542..250389 (+) | 1848 | WP_225874274.1 | type IV pilus secretin PilQ | Machinery gene |
| GFB47_RS01120 (GFB47_01125) | aroK | 250767..251285 (+) | 519 | WP_153448097.1 | shikimate kinase AroK | - |
| GFB47_RS01125 (GFB47_01130) | aroB | 251310..252401 (+) | 1092 | WP_153445882.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 22685.32 Da Isoelectric Point: 10.0363
>NTDB_id=396060 GFB47_RS01100 WP_153445876.1 246824..247411(+) (pilN) [Vibrio algicola strain SM1977]
MLHDINLLPWREEKREEYKQRFYGMVVLGVLLALALQWFGSLYIDHLKTQQQTRNQQLQTYVKELDKQLVSLKAIEAKHR
SILTRLRLVESLQNERNKTTDFMNLMPELVPEGVYIDKMKMNGREVEIAGISDSTARLATMLDSFERSAWLSDVEMHSII
SGKVLFGKKFQTFKVSFRFESKQPETAQAKTKGAK
MLHDINLLPWREEKREEYKQRFYGMVVLGVLLALALQWFGSLYIDHLKTQQQTRNQQLQTYVKELDKQLVSLKAIEAKHR
SILTRLRLVESLQNERNKTTDFMNLMPELVPEGVYIDKMKMNGREVEIAGISDSTARLATMLDSFERSAWLSDVEMHSII
SGKVLFGKKFQTFKVSFRFESKQPETAQAKTKGAK
Nucleotide
Download Length: 588 bp
>NTDB_id=396060 GFB47_RS01100 WP_153445876.1 246824..247411(+) (pilN) [Vibrio algicola strain SM1977]
ATGTTGCATGATATTAACCTCTTGCCATGGCGAGAAGAGAAGCGAGAAGAATATAAGCAACGTTTTTACGGCATGGTGGT
ATTGGGAGTGTTACTCGCGCTCGCACTGCAATGGTTTGGTAGCTTGTATATCGATCACTTAAAGACGCAGCAACAAACCC
GTAATCAGCAGTTGCAAACTTACGTTAAAGAACTGGACAAACAACTGGTCAGTTTAAAAGCAATTGAAGCCAAGCATAGA
TCTATTTTAACTCGTCTGCGCTTGGTGGAGTCACTGCAAAATGAGCGTAATAAAACCACCGATTTTATGAACCTGATGCC
AGAACTTGTTCCTGAAGGGGTCTATATCGATAAGATGAAAATGAATGGTCGAGAGGTTGAAATTGCTGGTATCAGTGATA
GTACCGCACGCTTAGCCACCATGCTCGATAGTTTTGAAAGATCAGCTTGGTTAAGTGATGTTGAAATGCACTCTATTATC
TCTGGTAAGGTTCTGTTTGGTAAAAAATTTCAAACCTTTAAAGTCTCGTTTCGTTTTGAATCCAAACAGCCAGAAACCGC
GCAAGCTAAAACGAAAGGAGCGAAATAA
ATGTTGCATGATATTAACCTCTTGCCATGGCGAGAAGAGAAGCGAGAAGAATATAAGCAACGTTTTTACGGCATGGTGGT
ATTGGGAGTGTTACTCGCGCTCGCACTGCAATGGTTTGGTAGCTTGTATATCGATCACTTAAAGACGCAGCAACAAACCC
GTAATCAGCAGTTGCAAACTTACGTTAAAGAACTGGACAAACAACTGGTCAGTTTAAAAGCAATTGAAGCCAAGCATAGA
TCTATTTTAACTCGTCTGCGCTTGGTGGAGTCACTGCAAAATGAGCGTAATAAAACCACCGATTTTATGAACCTGATGCC
AGAACTTGTTCCTGAAGGGGTCTATATCGATAAGATGAAAATGAATGGTCGAGAGGTTGAAATTGCTGGTATCAGTGATA
GTACCGCACGCTTAGCCACCATGCTCGATAGTTTTGAAAGATCAGCTTGGTTAAGTGATGTTGAAATGCACTCTATTATC
TCTGGTAAGGTTCTGTTTGGTAAAAAATTTCAAACCTTTAAAGTCTCGTTTCGTTTTGAATCCAAACAGCCAGAAACCGC
GCAAGCTAAAACGAAAGGAGCGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
55.385 |
100 |
0.554 |
| pilN | Vibrio cholerae strain A1552 |
54.974 |
97.949 |
0.538 |