Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   GFH30_RS11805 Genome accession   NZ_CP045650
Coordinates   2467227..2467934 (-) Length   235 a.a.
NCBI ID   WP_153389405.1    Uniprot ID   -
Organism   Acinetobacter wanghuae strain dk386     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2462227..2472934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS11785 (GFH30_11780) aroB 2462892..2463971 (-) 1080 WP_153372821.1 3-dehydroquinate synthase -
  GFH30_RS11790 (GFH30_11785) aroK 2464001..2464537 (-) 537 WP_153372823.1 shikimate kinase AroK -
  GFH30_RS11795 (GFH30_11790) pilQ 2464574..2466682 (-) 2109 WP_153372825.1 type IV pilus secretin PilQ Machinery gene
  GFH30_RS11800 (GFH30_11795) pilP 2466700..2467227 (-) 528 WP_153372827.1 pilus assembly protein PilP Machinery gene
  GFH30_RS11805 (GFH30_11800) comO 2467227..2467934 (-) 708 WP_153389405.1 type 4a pilus biogenesis protein PilO Machinery gene
  GFH30_RS11810 (GFH30_11805) comN 2467931..2468575 (-) 645 WP_153372831.1 PilN domain-containing protein Machinery gene
  GFH30_RS11815 (GFH30_11810) pilM 2468575..2469633 (-) 1059 WP_153372833.1 pilus assembly protein PilM Machinery gene
  GFH30_RS11820 (GFH30_11815) ponA 2469800..2472325 (+) 2526 WP_153372835.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26750.26 Da        Isoelectric Point: 4.7544

>NTDB_id=395921 GFH30_RS11805 WP_153389405.1 2467227..2467934(-) (comO) [Acinetobacter wanghuae strain dk386]
MSQQFDELNQDVVAAPKNKMTVEKFFQQFNTLDTSNYGGWPLAVKITCWLFIIALVFALVYFGFIRSKIESIQQANAQEQ
NLLNEFREKDSKLRNLQQYQVQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLESEIKQEFFIEQPI
AIEATGDYHAFGTFVSSIAGLSRIVTLHDFSITGTENKEKRSEIPTIDYVLKAKTYRYVGSAAATQEPSTTEGAQ

Nucleotide


Download         Length: 708 bp        

>NTDB_id=395921 GFH30_RS11805 WP_153389405.1 2467227..2467934(-) (comO) [Acinetobacter wanghuae strain dk386]
ATGAGTCAACAATTCGATGAATTAAATCAAGATGTTGTTGCTGCACCAAAAAATAAAATGACGGTGGAAAAGTTCTTTCA
GCAATTTAACACCTTAGATACAAGTAACTATGGTGGATGGCCTTTAGCGGTTAAAATTACCTGTTGGTTATTTATCATTG
CTTTGGTGTTTGCTTTGGTTTATTTCGGCTTTATTAGAAGTAAAATTGAGTCTATTCAACAAGCCAATGCGCAAGAACAG
AATCTGTTAAACGAATTTCGTGAAAAAGATTCGAAGTTACGTAACTTGCAACAATACCAAGTGCAGTTGCAAGAAATGGA
AGCGCGTTTTAATCAGCAATTAGAACAGTTGCCGAAAGAAACTGAGATTCCCGGTTTGGTTGAAGACATCAACTTGAGTG
GGGTCAATTCTGGACTGAAATTCAAAAATATCCGTCTAGAATCTGAAATTAAGCAAGAATTCTTTATTGAACAACCGATC
GCGATTGAAGCAACAGGTGATTACCATGCGTTTGGTACGTTTGTTAGCAGCATTGCAGGCTTATCACGTATTGTCACTTT
GCATGATTTCAGTATTACCGGGACTGAAAATAAAGAAAAGCGTTCTGAAATTCCAACAATTGATTATGTTTTAAAAGCCA
AAACGTATCGTTATGTGGGAAGCGCCGCTGCAACTCAAGAACCTTCTACGACTGAGGGGGCTCAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

68.067

100

0.689
  pilO Acinetobacter baumannii D1279779

66.383

100

0.664

Multiple sequence alignment