Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GFK26_RS05805 Genome accession   NZ_CP045644
Coordinates   1288129..1289667 (+) Length   512 a.a.
NCBI ID   WP_153281168.1    Uniprot ID   A0A5Q0LY54
Organism   Variovorax paradoxus strain 5C-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1283129..1294667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFK26_RS05780 (GFK26_05805) - 1283136..1284023 (-) 888 WP_153281164.1 LysR substrate-binding domain-containing protein -
  GFK26_RS05785 (GFK26_05810) - 1284042..1284971 (-) 930 WP_153281165.1 SMP-30/gluconolactonase/LRE family protein -
  GFK26_RS05790 (GFK26_05815) - 1285176..1286609 (-) 1434 WP_153281166.1 ammonium transporter -
  GFK26_RS05795 (GFK26_05820) glnK 1286639..1286977 (-) 339 WP_056583732.1 P-II family nitrogen regulator -
  GFK26_RS05800 (GFK26_05825) - 1287048..1287911 (-) 864 WP_153281167.1 TorF family putative porin -
  GFK26_RS05805 (GFK26_05830) comM 1288129..1289667 (+) 1539 WP_153281168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GFK26_RS05810 (GFK26_05835) - 1289686..1291662 (-) 1977 WP_153281169.1 serine/threonine-protein kinase -
  GFK26_RS05815 (GFK26_05840) tagF 1291700..1292434 (-) 735 WP_153281170.1 type VI secretion system-associated protein TagF -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53895.49 Da        Isoelectric Point: 8.5284

>NTDB_id=395789 GFK26_RS05805 WP_153281168.1 1288129..1289667(+) (comM) [Variovorax paradoxus strain 5C-2]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLDFPTNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIENHRLAGHEFAGELSLSGELRPVRGALAMAVATYTQGTAVRLVLPMDSAHEAALVPGAEVFGA
RHLLDAVRQFVASGGGPVDASDDGWARVRAAPGDGAPRYADLADVKGHTGAKRALEIAAAGGHSLLMVGEPGSGKSMLAH
RFAGLLPPMNVDEALESAAIASLDGRLAPERWMSRPTATPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFTRA
ALEALREPLETGTITITRAARRAEFPARFQLIAAMNPCPCGYLGSTLKPCRCTPERVARYQSKLSGPLLDRIDLHIEVAA
VSAPQLLDAPAGESTDSIRARVVSARERALRRQGHANQALQGRAIDTHAVLDSAARHLLQQAAARLGWSARSTHRALKVA
RTIADLAAEDAVQAAHVAEAVQYRRALRTGAP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=395789 GFK26_RS05805 WP_153281168.1 1288129..1289667(+) (comM) [Variovorax paradoxus strain 5C-2]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGCCTGGAAGCCGCCGCCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGTTGGTCGGACTGGCCGAAACGGAGGTCAAGGAAGCACGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGCCTCGACTTCCCGACGAACAAGAAGATCGTCGTCAACCTTGCGCCCGCTGATTTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCCATCGCCCTCGGCATCCTCGCGGCCAGCGGGCAGATCGAGAACCACCGGCTGGCCGGCCACGAGTT
CGCCGGCGAACTGTCGCTGTCGGGCGAGCTGCGCCCCGTGCGCGGCGCACTGGCGATGGCCGTGGCCACCTACACGCAGG
GCACGGCCGTGCGGCTGGTGCTGCCCATGGACAGCGCCCACGAGGCCGCGCTGGTGCCGGGCGCCGAGGTGTTCGGGGCG
CGGCACCTGCTCGACGCGGTGCGGCAATTCGTCGCCAGCGGCGGCGGGCCCGTCGATGCAAGCGACGACGGCTGGGCCCG
CGTGCGCGCCGCGCCCGGCGACGGTGCGCCGCGCTATGCCGACCTGGCCGACGTCAAGGGCCACACGGGCGCCAAGCGCG
CGCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGCTGATGGTGGGCGAGCCGGGTTCGGGCAAGTCGATGCTGGCGCAC
CGCTTCGCCGGCCTGCTGCCGCCGATGAACGTGGACGAGGCGCTGGAAAGCGCGGCCATCGCCAGCCTCGACGGCCGCCT
CGCACCCGAGCGCTGGATGAGCCGCCCGACGGCCACGCCGCACCACACGGCGAGCGCGGTGGCGCTGGTGGGCGGCGGCT
CGCCGCCGCGGCCGGGCGAAATCTCGCGCGCGCACCACGGCGTTCTGTTTCTGGACGAGTTCCCCGAGTTCACGCGCGCC
GCCCTCGAAGCGCTGCGCGAGCCGCTGGAGACCGGCACCATCACGATCACCCGCGCCGCCCGGCGCGCGGAGTTTCCGGC
GCGCTTCCAGCTCATCGCCGCCATGAACCCCTGCCCCTGCGGCTACCTCGGCTCCACGCTGAAGCCCTGCCGCTGCACGC
CCGAGCGCGTCGCGCGCTACCAGAGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTGGCGGCG
GTGTCGGCGCCGCAGCTGCTCGATGCACCGGCGGGCGAATCGACCGACAGCATCCGGGCGCGCGTGGTGAGCGCGCGCGA
ACGCGCGCTGCGGCGCCAGGGCCATGCGAACCAGGCGCTGCAGGGCCGCGCGATCGACACCCACGCCGTGCTCGACAGCG
CCGCGCGCCATCTGTTGCAGCAGGCGGCCGCGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCACTGAAGGTGGCG
CGCACCATCGCCGACCTCGCGGCGGAAGATGCCGTGCAGGCCGCGCATGTGGCGGAGGCGGTGCAGTACCGCCGCGCGCT
GCGCACCGGCGCGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0LY54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50

98.828

0.494
  comM Legionella pneumophila str. Paris

48.337

99.805

0.482
  comM Legionella pneumophila strain ERS1305867

48.337

99.805

0.482
  comM Glaesserella parasuis strain SC1401

48.031

99.219

0.477
  comM Vibrio campbellii strain DS40M4

47.826

98.828

0.473
  comM Haemophilus influenzae Rd KW20

47.255

99.609

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.836

99.805

0.438

Multiple sequence alignment