Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPY17_RS05245 | Genome accession | NZ_CP053816 |
| Coordinates | 1136931..1137935 (+) | Length | 334 a.a. |
| NCBI ID | WP_000568491.1 | Uniprot ID | Q9KR02 |
| Organism | Vibrio cholerae strain SA7G | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1131931..1142935
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY17_RS05220 (HPY17_05225) | lpxH | 1132758..1133498 (-) | 741 | WP_069730645.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
| HPY17_RS05225 (HPY17_05230) | - | 1133539..1134033 (-) | 495 | WP_000631302.1 | peptidylprolyl isomerase | - |
| HPY17_RS05230 (HPY17_05235) | cysS | 1134179..1135558 (+) | 1380 | WP_175245981.1 | cysteine--tRNA ligase | - |
| HPY17_RS05235 (HPY17_05240) | ruvC | 1135646..1136167 (+) | 522 | WP_000111359.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HPY17_RS05240 (HPY17_05245) | ruvA | 1136261..1136875 (+) | 615 | WP_000580350.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HPY17_RS05245 (HPY17_05250) | ruvB | 1136931..1137935 (+) | 1005 | WP_000568491.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPY17_RS05250 (HPY17_05255) | cydA | 1138394..1139980 (+) | 1587 | WP_000568053.1 | cytochrome ubiquinol oxidase subunit I | - |
| HPY17_RS05255 (HPY17_05260) | cydB | 1139998..1141134 (+) | 1137 | WP_000460767.1 | cytochrome d ubiquinol oxidase subunit II | - |
| HPY17_RS05260 (HPY17_05265) | cydX | 1141147..1141254 (+) | 108 | WP_000270285.1 | cytochrome bd-I oxidase subunit CydX | - |
| HPY17_RS05265 (HPY17_05270) | ybgE | 1141247..1141564 (+) | 318 | WP_123011047.1 | cyd operon protein YbgE | - |
| HPY17_RS05270 (HPY17_05275) | ybgC | 1141733..1142140 (+) | 408 | WP_001091290.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| HPY17_RS05275 (HPY17_05280) | tolQ | 1142130..1142813 (+) | 684 | WP_000123083.1 | protein TolQ | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37298.75 Da Isoelectric Point: 5.0460
>NTDB_id=395545 HPY17_RS05245 WP_000568491.1 1136931..1137935(+) (ruvB) [Vibrio cholerae strain SA7G]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
Nucleotide
Download Length: 1005 bp
>NTDB_id=395545 HPY17_RS05245 WP_000568491.1 1136931..1137935(+) (ruvB) [Vibrio cholerae strain SA7G]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTACAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGTG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTACAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGTG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.682 |
96.108 |
0.593 |
| ruvB | Streptococcus pneumoniae TIGR4 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
59.937 |
94.91 |
0.569 |
| ruvB | Synechocystis sp. PCC 6803 |
55.663 |
92.515 |
0.515 |
| ruvB | Helicobacter pylori 26695 |
54.276 |
91.018 |
0.494 |