Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPY17_RS05240 Genome accession   NZ_CP053816
Coordinates   1136261..1136875 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain SA7G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1131261..1141875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS05215 (HPY17_05220) - 1131448..1132662 (-) 1215 WP_001903180.1 EAL and HDOD domain-containing protein -
  HPY17_RS05220 (HPY17_05225) lpxH 1132758..1133498 (-) 741 WP_069730645.1 UDP-2,3-diacylglucosamine diphosphatase -
  HPY17_RS05225 (HPY17_05230) - 1133539..1134033 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  HPY17_RS05230 (HPY17_05235) cysS 1134179..1135558 (+) 1380 WP_175245981.1 cysteine--tRNA ligase -
  HPY17_RS05235 (HPY17_05240) ruvC 1135646..1136167 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  HPY17_RS05240 (HPY17_05245) ruvA 1136261..1136875 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  HPY17_RS05245 (HPY17_05250) ruvB 1136931..1137935 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPY17_RS05250 (HPY17_05255) cydA 1138394..1139980 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  HPY17_RS05255 (HPY17_05260) cydB 1139998..1141134 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  HPY17_RS05260 (HPY17_05265) cydX 1141147..1141254 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  HPY17_RS05265 (HPY17_05270) ybgE 1141247..1141564 (+) 318 WP_123011047.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=395544 HPY17_RS05240 WP_000580350.1 1136261..1136875(+) (ruvA) [Vibrio cholerae strain SA7G]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=395544 HPY17_RS05240 WP_000580350.1 1136261..1136875(+) (ruvA) [Vibrio cholerae strain SA7G]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTCGTGC
GGGAAGATGCACAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTAGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCAGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363