Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VARPA_RS01100 Genome accession   NC_014931
Coordinates   235749..237290 (-) Length   513 a.a.
NCBI ID   WP_013538689.1    Uniprot ID   -
Organism   Variovorax paradoxus EPS     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230749..242290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VARPA_RS01095 (Varpa_0219) - 234537..235724 (+) 1188 WP_013538688.1 fumarylacetoacetate hydrolase family protein -
  VARPA_RS01100 (Varpa_0220) comM 235749..237290 (-) 1542 WP_013538689.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VARPA_RS01105 (Varpa_0221) - 237513..238382 (+) 870 WP_013538690.1 TorF family putative porin -
  VARPA_RS01110 (Varpa_0222) glnK 238449..238787 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  VARPA_RS01120 (Varpa_0223) - 238816..240360 (+) 1545 WP_200861448.1 ammonium transporter -
  VARPA_RS01125 (Varpa_0224) - 240550..241482 (+) 933 WP_013538692.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54356.08 Da        Isoelectric Point: 7.3965

>NTDB_id=39540 VARPA_RS01100 WP_013538689.1 235749..237290(-) (comM) [Variovorax paradoxus EPS]
MSLSLVQSRALLGLEAADVTVEVHLANGLPSFTLVGLAETEVKESRDRVRSAIQNAGLEFPNNKKIVVSLAPADLPKDSG
RFDLPIALGILAASGQFQGTRLAGHEFAGELSLSGELRPVRGALAMALALHTRGVATKLVLPMDSAQEAALVPGGEVYGA
RHLLDVVRQFLPEEDKAAAPEPSDDGWARIYVTPGVAASQYADLAEVKGHVGAKRALEIAAAGGHSLLMVGEPGSGKSML
AQRFAGLLPAMSIDEALESAAVASLGGRFATERWMCRPTSAPHHTSSAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFA
RSALEALREPLETGTITIVRAARRAEFPARFQLIAAMNPCPCGYLGSSLKSCRCTPDQVSRYQGKLSGPLLDRIDLHIEV
PAVSAEQLLNSPPGESTESIRSRVVAARERAMQRQGHANQNLQGSAIDKHAELDATALKFIYNAAAKLGWSARSTHRALK
VARTIADLASSETVQVMHVAEAVQYRRGLHGVV

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=39540 VARPA_RS01100 WP_013538689.1 235749..237290(-) (comM) [Variovorax paradoxus EPS]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCTTTGCTTGGGCTGGAAGCGGCCGATGTCACGGTCGAGGTGCATCTGGCGAA
CGGTTTGCCCAGTTTCACGCTCGTGGGGCTGGCGGAAACCGAGGTAAAGGAATCGCGCGACCGGGTGCGTTCGGCCATCC
AGAACGCGGGCCTGGAGTTTCCGAACAACAAAAAGATCGTGGTGAGCCTCGCGCCAGCCGACTTGCCGAAGGATTCCGGC
CGCTTCGATCTGCCGATTGCGCTGGGCATCCTCGCGGCCAGCGGGCAGTTCCAGGGCACGCGGCTGGCGGGGCACGAGTT
CGCGGGCGAGCTGTCGCTGTCGGGCGAGTTGCGGCCGGTACGCGGCGCGTTGGCCATGGCGCTGGCCCTGCACACGCGTG
GCGTCGCGACGAAGCTGGTACTGCCGATGGACAGCGCGCAAGAGGCCGCGCTGGTGCCCGGCGGAGAGGTGTACGGCGCG
AGGCACCTGCTCGATGTGGTGCGGCAGTTCCTGCCCGAGGAGGACAAGGCCGCGGCACCCGAACCCTCCGACGATGGCTG
GGCGCGGATTTACGTCACACCGGGCGTCGCCGCATCGCAGTACGCGGATCTGGCCGAGGTCAAGGGCCATGTCGGTGCCA
AGCGCGCACTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGTTGATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATGCTC
GCGCAGCGCTTTGCGGGCCTGCTGCCGGCGATGAGCATCGACGAAGCGCTGGAGAGCGCAGCCGTCGCGAGCCTGGGCGG
GCGCTTCGCGACGGAGCGGTGGATGTGCAGGCCGACTTCGGCGCCGCATCACACCTCTTCCGCCGTCGCATTGGTGGGTG
GCGGCTCGCCGCCGCGGCCGGGAGAGATTTCAAGAGCGCATCACGGCGTGCTGTTTCTCGATGAATTTCCCGAATTCGCG
CGCTCCGCATTGGAAGCGCTGCGCGAGCCGCTGGAGACCGGCACGATCACGATCGTTCGTGCTGCGCGTCGCGCCGAATT
TCCTGCGCGCTTCCAGTTGATCGCGGCGATGAACCCCTGCCCTTGCGGCTATCTCGGTTCATCGCTGAAGTCCTGCCGCT
GCACGCCGGACCAGGTCTCGCGCTACCAGGGCAAGCTCAGCGGGCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTG
CCCGCGGTGTCGGCGGAGCAGCTGCTCAATTCACCCCCGGGCGAATCGACCGAGAGCATCCGCAGCCGCGTGGTGGCGGC
GCGCGAACGCGCGATGCAGCGCCAGGGCCACGCCAACCAGAACCTGCAGGGCAGCGCGATCGACAAGCATGCGGAGCTGG
ACGCCACGGCGCTGAAGTTCATCTACAACGCGGCCGCCAAGCTGGGGTGGTCGGCGCGCAGCACGCACCGGGCGCTGAAG
GTGGCGCGAACGATTGCGGACCTGGCTTCGTCGGAGACGGTGCAGGTTATGCATGTGGCGGAGGCGGTGCAGTACCGCAG
GGGGTTGCACGGTGTGGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

50.487

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.487

100

0.505
  comM Vibrio cholerae strain A1552

50.491

99.22

0.501
  comM Glaesserella parasuis strain SC1401

49.116

99.22

0.487
  comM Vibrio campbellii strain DS40M4

48.824

99.415

0.485
  comM Haemophilus influenzae Rd KW20

48.824

99.415

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.555

99.805

0.435

Multiple sequence alignment