Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | GD578_RS04815 | Genome accession | NZ_CP045560 |
| Coordinates | 992094..993212 (-) | Length | 372 a.a. |
| NCBI ID | WP_002052019.1 | Uniprot ID | A0A1V0YUM2 |
| Organism | Acinetobacter nosocomialis strain AC1530 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 987094..998212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GD578_RS04785 (GD578_04825) | - | 987975..988430 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| GD578_RS04790 (GD578_04830) | - | 988525..989457 (-) | 933 | WP_086610772.1 | IS5 family transposase | - |
| GD578_RS04795 (GD578_04840) | - | 989631..990698 (+) | 1068 | WP_004710227.1 | hypothetical protein | - |
| GD578_RS04800 (GD578_04845) | - | 990698..991021 (+) | 324 | WP_017393294.1 | RnfH family protein | - |
| GD578_RS04805 (GD578_04850) | - | 991077..991475 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| GD578_RS04810 (GD578_04855) | fur | 991587..992024 (+) | 438 | WP_002052029.1 | ferric iron uptake transcriptional regulator | - |
| GD578_RS04815 (GD578_04860) | pilU | 992094..993212 (-) | 1119 | WP_002052019.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GD578_RS04820 (GD578_04865) | pilT | 993240..994277 (-) | 1038 | WP_006581387.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GD578_RS04825 (GD578_04870) | - | 994404..995096 (+) | 693 | WP_017393295.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GD578_RS04830 (GD578_04875) | - | 995204..996046 (+) | 843 | WP_017393296.1 | undecaprenyl-diphosphate phosphatase | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41980.18 Da Isoelectric Point: 6.6944
>NTDB_id=395134 GD578_RS04815 WP_002052019.1 992094..993212(-) (pilU) [Acinetobacter nosocomialis strain AC1530]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRKEFAETRECNFAIMNRDKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPTVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLANEGPDQITDEKQHLTFDRQ
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRKEFAETRECNFAIMNRDKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPTVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLANEGPDQITDEKQHLTFDRQ
Nucleotide
Download Length: 1119 bp
>NTDB_id=395134 GD578_RS04815 WP_002052019.1 992094..993212(-) (pilU) [Acinetobacter nosocomialis strain AC1530]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCATCGGATCTTTTTATTACAGATGGTGTTGCACCATC
GATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAATAGCCTTTCAGGTGAAGTAATTGGTCAACTCTTACATTCCA
TCATGAGTGAAAAACAACGTAAAGAATTTGCAGAGACTCGTGAATGTAACTTTGCCATCATGAACCGCGATAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAACGTGACATGCCAGGTATGGTACTACGTCGAATTGAAACGAAAATTCCTTCAAT
TGATGACTTACAGTTGCCGACTGTGCTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGTGCAACAG
GTACAGGTAAATCGACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAAGGCCATATTATTACCATTGAG
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAACGTGAAGTCGGTATTGATACGGACTCTTTCGA
AATTGCTTTAAAAAATACATTACGACAAGCACCTGATGTGATCTTAATTGGTGAGATTCGTTCTCGTGAAGTCATGGACT
ACGCAATTGGCTTTGCTGAAACAGGTCACCTTGTATTAGCTACAATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGCCAGCTCTACATGGACTTGTCTCTTAACTTAAAAGCCATGATTGCACA
GCAGCTTATTCCAACACCAGATGGTAATTCACGCCGTGCAGCGATTGAGATCTTAATTAACTCACCATTAATTTCAGACT
ATATCCGTAAAGGTGAAATTCATGAAATTAAGGACTTGATGAAACGCTCACGTGAGCTTGGTATGCAGACCTTTGACCAA
GCTTTATTCGACTTATACAAAGCCGGCCAAATTACTTATAAAGATGCGCTTAAACATGCCGACTCACCAAACGATTTACG
TTTAACGATTAAACTTGCAAATGAAGGTCCTGATCAAATAACAGACGAAAAACAGCATTTAACTTTTGATCGTCAGTAA
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCATCGGATCTTTTTATTACAGATGGTGTTGCACCATC
GATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAATAGCCTTTCAGGTGAAGTAATTGGTCAACTCTTACATTCCA
TCATGAGTGAAAAACAACGTAAAGAATTTGCAGAGACTCGTGAATGTAACTTTGCCATCATGAACCGCGATAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAACGTGACATGCCAGGTATGGTACTACGTCGAATTGAAACGAAAATTCCTTCAAT
TGATGACTTACAGTTGCCGACTGTGCTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGTGCAACAG
GTACAGGTAAATCGACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAAGGCCATATTATTACCATTGAG
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAACGTGAAGTCGGTATTGATACGGACTCTTTCGA
AATTGCTTTAAAAAATACATTACGACAAGCACCTGATGTGATCTTAATTGGTGAGATTCGTTCTCGTGAAGTCATGGACT
ACGCAATTGGCTTTGCTGAAACAGGTCACCTTGTATTAGCTACAATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGCCAGCTCTACATGGACTTGTCTCTTAACTTAAAAGCCATGATTGCACA
GCAGCTTATTCCAACACCAGATGGTAATTCACGCCGTGCAGCGATTGAGATCTTAATTAACTCACCATTAATTTCAGACT
ATATCCGTAAAGGTGAAATTCATGAAATTAAGGACTTGATGAAACGCTCACGTGAGCTTGGTATGCAGACCTTTGACCAA
GCTTTATTCGACTTATACAAAGCCGGCCAAATTACTTATAAAGATGCGCTTAAACATGCCGACTCACCAAACGATTTACG
TTTAACGATTAAACTTGCAAATGAAGGTCCTGATCAAATAACAGACGAAAAACAGCATTTAACTTTTGATCGTCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
75.132 |
100 |
0.763 |
| pilU | Pseudomonas stutzeri DSM 10701 |
68.464 |
99.731 |
0.683 |
| pilU | Vibrio cholerae strain A1552 |
53.514 |
99.462 |
0.532 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.254 |
95.43 |
0.403 |