Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | HPY06_RS04745 | Genome accession | NZ_CP053804 |
| Coordinates | 1015516..1015827 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain SL6Y | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1010516..1020827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY06_RS04730 (HPY06_04735) | lon | 1010553..1012913 (+) | 2361 | WP_001047609.1 | endopeptidase La | - |
| HPY06_RS04735 (HPY06_04740) | - | 1013097..1013369 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| HPY06_RS04740 (HPY06_04745) | ppiD | 1013522..1015381 (+) | 1860 | WP_000969319.1 | peptidylprolyl isomerase | - |
| HPY06_RS04745 (HPY06_04750) | comEA | 1015516..1015827 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| HPY06_RS04750 (HPY06_04755) | cmk | 1016010..1016687 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| HPY06_RS04755 (HPY06_04760) | rpsA | 1016796..1018466 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| HPY06_RS04760 (HPY06_04765) | ihfB | 1018755..1019033 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| HPY06_RS04765 (HPY06_04770) | - | 1019172..1019453 (+) | 282 | WP_000691490.1 | LapA family protein | - |
| HPY06_RS04770 (HPY06_04775) | lapB | 1019465..1020634 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=395124 HPY06_RS04745 WP_001166105.1 1015516..1015827(+) (comEA) [Vibrio cholerae strain SL6Y]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=395124 HPY06_RS04745 WP_001166105.1 1015516..1015827(+) (comEA) [Vibrio cholerae strain SL6Y]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGCCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGCCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |