Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPY16_RS05070 Genome accession   NZ_CP053802
Coordinates   1090110..1091114 (+) Length   334 a.a.
NCBI ID   WP_001960191.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085110..1096114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS05045 (HPY16_05040) lpxH 1085937..1086677 (-) 741 WP_069216743.1 UDP-2,3-diacylglucosamine diphosphatase -
  HPY16_RS05050 (HPY16_05045) - 1086718..1087212 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  HPY16_RS05055 (HPY16_05050) cysS 1087358..1088737 (+) 1380 WP_000913182.1 cysteine--tRNA ligase -
  HPY16_RS05060 (HPY16_05055) ruvC 1088825..1089346 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  HPY16_RS05065 (HPY16_05060) ruvA 1089440..1090054 (+) 615 WP_042987912.1 Holliday junction branch migration protein RuvA Machinery gene
  HPY16_RS05070 (HPY16_05065) ruvB 1090110..1091114 (+) 1005 WP_001960191.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPY16_RS05075 (HPY16_05070) cydA 1091573..1093159 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  HPY16_RS05080 (HPY16_05075) cydB 1093177..1094313 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  HPY16_RS05085 (HPY16_05080) cydX 1094326..1094433 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  HPY16_RS05090 (HPY16_05085) ybgE 1094426..1094743 (+) 318 WP_032472465.1 cyd operon protein YbgE -
  HPY16_RS05095 (HPY16_05090) ybgC 1094912..1095319 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  HPY16_RS05100 (HPY16_05095) tolQ 1095309..1095992 (+) 684 WP_000123083.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37300.72 Da        Isoelectric Point: 5.0460

>NTDB_id=395044 HPY16_RS05070 WP_001960191.1 1090110..1091114(+) (ruvB) [Vibrio cholerae strain L6G]
MIEADRLIAPTSNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKIADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=395044 HPY16_RS05070 WP_001960191.1 1090110..1091114(+) (ruvB) [Vibrio cholerae strain L6G]
ATGATAGAAGCCGATCGTTTAATCGCTCCAACCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGACCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCATTGCGTGATCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AATCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGTG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.606

98.802

0.599
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

54.037

96.407

0.521
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494