Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPY16_RS05065 Genome accession   NZ_CP053802
Coordinates   1089440..1090054 (+) Length   204 a.a.
NCBI ID   WP_042987912.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084440..1095054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS05040 (HPY16_05035) - 1084627..1085841 (-) 1215 WP_057554791.1 EAL and HDOD domain-containing protein -
  HPY16_RS05045 (HPY16_05040) lpxH 1085937..1086677 (-) 741 WP_069216743.1 UDP-2,3-diacylglucosamine diphosphatase -
  HPY16_RS05050 (HPY16_05045) - 1086718..1087212 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  HPY16_RS05055 (HPY16_05050) cysS 1087358..1088737 (+) 1380 WP_000913182.1 cysteine--tRNA ligase -
  HPY16_RS05060 (HPY16_05055) ruvC 1088825..1089346 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  HPY16_RS05065 (HPY16_05060) ruvA 1089440..1090054 (+) 615 WP_042987912.1 Holliday junction branch migration protein RuvA Machinery gene
  HPY16_RS05070 (HPY16_05065) ruvB 1090110..1091114 (+) 1005 WP_001960191.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPY16_RS05075 (HPY16_05070) cydA 1091573..1093159 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  HPY16_RS05080 (HPY16_05075) cydB 1093177..1094313 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  HPY16_RS05085 (HPY16_05080) cydX 1094326..1094433 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  HPY16_RS05090 (HPY16_05085) ybgE 1094426..1094743 (+) 318 WP_032472465.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22079.84 Da        Isoelectric Point: 5.0954

>NTDB_id=395043 HPY16_RS05065 WP_042987912.1 1089440..1090054(+) (ruvA) [Vibrio cholerae strain L6G]
MIGRLRGMLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=395043 HPY16_RS05065 WP_042987912.1 1089440..1090054(+) (ruvA) [Vibrio cholerae strain L6G]
GTGATTGGACGTCTTCGCGGTATGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTCGTGC
GGGAAGATGCACAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTAGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAACCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTAGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment