Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | HPY16_RS04725 | Genome accession | NZ_CP053802 |
| Coordinates | 1009097..1009408 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain L6G | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1004097..1014408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY16_RS04710 (HPY16_04705) | lon | 1004134..1006494 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| HPY16_RS04715 (HPY16_04710) | - | 1006678..1006950 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| HPY16_RS04720 (HPY16_04715) | ppiD | 1007103..1008962 (+) | 1860 | WP_175248033.1 | peptidylprolyl isomerase | - |
| HPY16_RS04725 (HPY16_04720) | comEA | 1009097..1009408 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| HPY16_RS04730 (HPY16_04725) | cmk | 1009591..1010268 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| HPY16_RS04735 (HPY16_04730) | rpsA | 1010377..1012047 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| HPY16_RS04740 (HPY16_04735) | ihfB | 1012336..1012614 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| HPY16_RS04745 (HPY16_04740) | - | 1012753..1013034 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| HPY16_RS04750 (HPY16_04745) | lapB | 1013046..1014215 (+) | 1170 | WP_175248034.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=395040 HPY16_RS04725 WP_001166105.1 1009097..1009408(+) (comEA) [Vibrio cholerae strain L6G]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=395040 HPY16_RS04725 WP_001166105.1 1009097..1009408(+) (comEA) [Vibrio cholerae strain L6G]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGCCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGCCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |