Detailed information NTG0395008

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: GEV41_RS27350
• Genome accession: NZ_CP045551
• Coordinates: 5913570..5914766 (+)
• Length: 398 a.a.
• NCBI ID: WP_281223918.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain NY5709
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5908570..5919766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEV41_RS27330 (GEV41_28140)	glnK	5909806..5910144 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
GEV41_RS27335 (GEV41_28145)	-	5910664..5910930 (+)	267	WP_003253640.1	accessory factor UbiK family protein	-
GEV41_RS27340 (GEV41_28150)	-	5910931..5911284 (+)	354	WP_004575824.1	gamma-glutamylcyclotransferase family protein	-
GEV41_RS27345 (GEV41_28155)	-	5911238..5913307 (-)	2070	WP_232891516.1	DUF4034 domain-containing protein	-
GEV41_RS27350 (GEV41_28160)	comM	5913570..5914766 (+)	1197	WP_281223918.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
GEV41_RS27355 (GEV41_28165)	-	5915011..5915979 (+)	969	WP_245354969.1	site-specific integrase	-
GEV41_RS27360 (GEV41_28170)	-	5915964..5917664 (+)	1701	WP_173881300.1	hypothetical protein	-
GEV41_RS27365 (GEV41_28175)	-	5918276..5919700 (+)	1425	WP_173881302.1	site-specific integrase	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 42559.03 Da
• Isoelectric Point: 9.6116

>NTDB_id=395008 GEV41_RS27350 WP_281223918.1 5913570..5914766(+) (comM) [Pseudomonas putida strain NY5709]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCTVNMHVGRFTPNDVTHGHQYRRSTLGDTRTYQRPEALSCRRRRRGAMGN

Nucleotide

• Length: 1197 bp

>NTDB_id=395008 GEV41_RS27350 WP_281223918.1 5913570..5914766(+) (comM) [Pseudomonas putida strain NY5709]
ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCATCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGTACAGTTAACATGCACGTAGGAAGGTTCACACCCAACGACGTGACCCATGGACACCAGTATAGGAGGAGCACGC
TTGGGGACACTCGAACGTATCAACGCCCCGAGGCACTTAGCTGTCGTCGACGACGAAGGGGTGCGATGGGAAATTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	60.684	88.191	0.535
comM	Vibrio cholerae strain A1552	60.172	87.688	0.528
comM	Haemophilus influenzae Rd KW20	59.322	88.945	0.528
comM	Glaesserella parasuis strain SC1401	58.192	88.945	0.518
comM	Legionella pneumophila str. Paris	54.857	87.94	0.482
comM	Legionella pneumophila strain ERS1305867	54.857	87.94	0.482
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.619	94.975	0.452