Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GAY96_RS00250 Genome accession   NZ_CP045550
Coordinates   57635..59149 (+) Length   504 a.a.
NCBI ID   WP_265573888.1    Uniprot ID   -
Organism   Venatoribacter cucullus strain ASxS5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 52635..64149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY96_RS00235 (GAY96_00235) - 53255..54154 (+) 900 WP_228345509.1 LysR family transcriptional regulator -
  GAY96_RS00240 (GAY96_00240) - 54236..54859 (+) 624 WP_265573886.1 SCO family protein -
  GAY96_RS00245 (GAY96_00245) - 54872..57439 (-) 2568 WP_265573887.1 S8 family serine peptidase -
  GAY96_RS00250 (GAY96_00250) comM 57635..59149 (+) 1515 WP_265573888.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GAY96_RS00255 (GAY96_00255) - 59209..59397 (+) 189 WP_228345514.1 hypothetical protein -
  GAY96_RS00260 (GAY96_00260) rep 59499..61526 (+) 2028 WP_228345515.1 DNA helicase Rep -
  GAY96_RS00265 (GAY96_00265) - 61719..62879 (+) 1161 WP_265573889.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54543.37 Da        Isoelectric Point: 7.7066

>NTDB_id=394960 GAY96_RS00250 WP_265573888.1 57635..59149(+) (comM) [Venatoribacter cucullus strain ASxS5]
MSLARIYTRAMAGIDAPPVVVEVHLSGGLPSLSLVGLPETAVKESKDRVRSALLNSDFEFPAKRITINLSPADLPKEGGR
YDLAIALGILAASEQIPATLLEQHEFIGELTLGGELQRVPGVLPCALHSAKAGRTLVLPAQNAGEAALCHQGEFRAASKL
REVTAYLQGLQALTVVERAEPAAPALLHSADLSDVRGQPQARRALEIAAAGDHNLLFIGPPGTGKTMLASRLPGILPPMS
EEEALVSASVYSISNQSSDWQQRWRVRPFRAPHHTASGVALVGGGSSPKPGEISLAHGGVLFLDELPEFSRKVLDVLREP
LENGRIVISRANRSMTFPARFQLIAAMNPCPCGYFGDPSGRCHCTSEQIRRYQGQTSGPLLDRIDLHVEVPALPPALLQQ
APPGESSATVQARVMAARQRQWQRQGCANAALDPQQRGQFCALQQADEDWFLNAIEKLQLSARGYHRLLKIARTVADLNG
DEWIARPHLLEALSYRSLDRYRPG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=394960 GAY96_RS00250 WP_265573888.1 57635..59149(+) (comM) [Venatoribacter cucullus strain ASxS5]
ATGTCGCTTGCCCGAATTTACACCCGCGCCATGGCGGGTATCGATGCACCGCCGGTGGTGGTGGAAGTGCACTTATCCGG
TGGATTGCCCTCGCTCAGCCTGGTCGGGTTGCCGGAAACGGCGGTGAAGGAAAGCAAAGACCGGGTGCGCAGTGCGCTGC
TGAACAGCGATTTTGAGTTTCCGGCCAAACGCATCACCATCAATTTATCGCCGGCCGATCTGCCCAAAGAAGGTGGCCGT
TACGATCTGGCCATTGCGCTGGGCATTCTGGCGGCGTCGGAGCAGATTCCCGCAACGCTGCTGGAACAGCACGAGTTTAT
AGGCGAGCTGACCTTAGGCGGCGAACTGCAACGGGTGCCGGGGGTTTTGCCGTGCGCACTGCACAGTGCCAAAGCCGGGC
GCACGCTGGTGTTGCCGGCGCAGAACGCCGGCGAAGCGGCGTTGTGCCATCAGGGTGAATTCCGCGCCGCCAGCAAACTG
CGCGAGGTCACGGCTTATCTGCAAGGGCTGCAGGCGCTTACGGTGGTTGAACGTGCTGAGCCGGCGGCACCGGCCCTGCT
GCACAGCGCCGACCTCAGCGATGTACGCGGCCAGCCGCAGGCGCGGCGGGCGCTGGAAATCGCCGCCGCCGGCGATCATA
ACCTGCTGTTTATCGGCCCGCCGGGCACCGGCAAAACCATGCTGGCCAGCCGCTTGCCGGGCATTCTGCCGCCCATGAGT
GAAGAAGAAGCACTGGTATCGGCCTCGGTGTATTCCATCAGTAATCAGAGCAGTGACTGGCAGCAGCGCTGGCGGGTACG
GCCCTTCCGTGCGCCACACCACACGGCGTCTGGTGTGGCGCTGGTGGGCGGTGGCTCATCGCCTAAGCCGGGGGAAATAT
CGCTGGCGCATGGCGGCGTATTGTTTCTGGATGAGCTGCCCGAATTCAGCCGCAAGGTGCTGGATGTGTTGCGTGAACCG
CTGGAAAACGGCCGTATTGTCATCAGCCGGGCCAACCGTTCCATGACCTTTCCGGCGCGTTTTCAGCTGATTGCGGCCAT
GAACCCGTGCCCCTGTGGCTATTTCGGTGACCCGTCCGGGCGCTGCCATTGCACCAGTGAACAAATCCGTCGTTATCAGG
GCCAGACCTCCGGCCCGCTGCTCGACCGTATTGATCTGCATGTGGAAGTGCCGGCGCTGCCGCCGGCGTTGTTGCAGCAG
GCGCCGCCCGGCGAAAGTTCGGCCACGGTGCAGGCGCGGGTGATGGCGGCGCGCCAGCGTCAGTGGCAACGCCAGGGCTG
TGCCAATGCCGCGCTCGATCCACAGCAGCGCGGGCAGTTCTGTGCGTTACAGCAGGCCGATGAAGACTGGTTTCTGAACG
CCATTGAAAAGCTGCAGCTGTCGGCGCGCGGTTACCACCGGTTGCTGAAAATTGCCCGCACCGTGGCGGATTTGAATGGT
GACGAATGGATTGCCCGGCCGCACCTGTTGGAAGCGCTCAGTTACCGCAGCCTGGACCGCTATCGGCCGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.086

99.405

0.567
  comM Vibrio campbellii strain DS40M4

56.375

99.603

0.562
  comM Glaesserella parasuis strain SC1401

54.365

100

0.544
  comM Haemophilus influenzae Rd KW20

53.571

100

0.536
  comM Legionella pneumophila str. Paris

52.381

100

0.524
  comM Legionella pneumophila strain ERS1305867

52.381

100

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.64

100

0.468

Multiple sequence alignment